RNA id: XR_002651551.1


Basic Information

Item Value
RNA id XR_002651551.1
length 2486
lncRNA type inter_gene
GC content 0.43
exon number 9
gene id LOC111195232
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 14953444 ~ 15001573 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGTACAGTCTAACCCATGTACACCTGTCagttttgctttattttctttatgatTGGACCGTCTATCAGGTTCTCACGGTTTGGGTGTTTCTATTGGTTCCTGGGTGAGGGGGGCGGGGCGTGTCGCGCTGTCGTGAGCCAGAGGTAGAGAGACCAGAGGAACGGCTAAGTAgggttttaaaaatagttttactcaaacaaaaaacagcttttaaagtaaaaaaaactctgctttTACTCGCTTTAAGTGTCTGGTGGACCTTTTTAACGCCGTGTAGTGCCGTTTTCACTGAGTAGTTTACTAACagtttgttagttagctaagctaagctactgAGCTAAGAGCGCTTAGCAACCGTTAGTTAGCTAATGAGCTTAGTTTGTTAACTAGCAGCTAGTTAGCGGttagcttgtttgtttgtttggagcaGCCGGAGGAGCTCGGAGTGAAAATTCAGCGTCAATTAACTGCTGAGCGAGAGATActggactctacagcgccctgCTGTGTAGCTGGAGCTGAAGTCACAGAGTGGGATACATGACTCCAGAGCTGCAgcccaaaagagagagagaaagcgggGGAGTGAGGGACGCTGAGGAAAAGGAGCCAGAACCGACCCAGCAGTGCGTTCATTGGAGAATGCAGATAAAACGGCTGCGGTGCCAGAGTGTGGGATACCGGACTCCAGAACTACAGAGCTACAGCCTAAGAGAGGGAGCGGGAAAGTGAGGGATGCTGAGCAGAAGGAGCCAGAAACGACTCCACCAGCACAGTTATTGCAGGTCCCAATCAGCAGCCCTGACTTCACAAGACCTGATATCACCTGGTACAAGCATGTTTGCAGCAGACCCTTTAaggctgttttcacacctgaaagtccggaccagaGTTCATCATACCAAGAAGAGGTTGTGGGGTCCTCACAACAAACTGATGATCATCTGCTACTACAGAACAAGCAGCAAGACCAGCTGGTGGTTGTAGCATGGTCCCTGTCTTGTAGCTCTGACCCATCCAGGCATGGACTCCACGAGACCGGGTCTCACTTGAAACATGCACATTTGCAGCAGATctttaagggcgttttcacacctgaaagtccggactaGAGTTCATACcaagCTACCTTTGGGAAGTGTACCTCTTGGTAAGAGACAGGCTTACAAGACACACTCGAAAACAGCCAACAGACTTTGAGAAGAGGTGAATCACTGGACTGAGAGATGCAGGATGCTTGTTTTGACAAATTGACACAAGTCCATCAGTGAACAACCACCATCTTTGTTTGCAGTGGTGTCAGGACTAAGGAACCTGGACTATTACAGACTGAAATTGAATCATCTTTAATGACAAATCCAGGCTCAAATATGGAGAGAGCCTCATGCTAAACGCAGCGCTCCCGACTCGACTCGACTCTTCTGATAGGATTAGAAGTCCTTGGGAGTTCCTTGGCGGGCAGTTCGAAGTCCCTTTGGTGTCTGAGGTGGATGCTGACAAGCCTTCTTCACAGGGGTATTGATGTGGCAGGACCATGGCAGTTCCTGTGAGATGCAAACACCAAGAGAAAGGCTGCAGCTGCTGTTGTGAAAATGTAGCCGAGCGAATGACAAGAGGAAAAACAGTAAAGCAGCGCTTCCCCGGGCCACAGACCTTCCTTCATCTTCTCAACTGCTACAGTGACTGTAAGAGCTGAGGGCGGTGCTGGCTGCTGCAGTCTATCTGTTAATATTTGACATGAATTGATTGTGGATGTTTTGGAAGGTTTATTCCTGCAGTTTCCTTTTCAATCAGAAGTCGCTTTGACAGAGTGCTCGTGCCCGATCAGGAGATCTGAGAGCTGAAGCAGTTCAGGTACTGTTCTCATAAATGGCAGCTGTGTGCACTTCTATCAGTGTTTTTACTATTCACTTTTACTGTGTCTAAATTTAGTCTCATTTAGTCTCAAGTATCATTAgaagagaacacagagagagtcTCAGAATTAAAATGGATTTCAGATGTAGAAATAGATACATTTGACACGTCCCttaattattaacaatataaataaataaaaaagtaaaaaaaagaaaaaaaaaaggggaataAAGGTATTTCACAGGGTTCAAAATTCTAAACCTATATCAAGCCTGACAGTTtgattgaatttatttattttttatttatttaacacttcAATTCTTTACCCCTGTTTATTATCAATGCTTGGCTCTAAATTGAACGTGTCACCTTATGTGTATTTCTGTATGAAAATACATTTTGGTTaatagacttttattttattataattctgCTGCAGTTTGGTTTAttctacttatttttattttttttctgtcccGTCAAACTGTTACACTGTAAACATTTAAATCACCTTGAGTTACGAGACCTGTTTCATACATTATATCCTACTTTATATCTAAGAGTTTAAAATGATGTTGACAGAAAATGCTTCATTAAAGGAGTAACATGATCTAATTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249916 lncRNA downstream 616803 14335946 ~ 14336641 (-) True G184447
XR_002651527.1 lncRNA downstream 768100 14180105 ~ 14185344 (-) True LOC111195216
TU249891 lncRNA downstream 822349 14128528 ~ 14131095 (-) True G184422
TU249871 lncRNA downstream 962557 13988809 ~ 13990887 (-) False LOC103031091
TU249860 lncRNA downstream 1025131 13928106 ~ 13928313 (-) True G184396
XR_452783.2 lncRNA upstream 46174 15047747 ~ 15052870 (-) True LOC103043324
TU250410 lncRNA upstream 46174 15047747 ~ 15052837 (-) False LOC103043324
TU250424 lncRNA upstream 307936 15309509 ~ 15340580 (-) False LOC103043525
TU250443 lncRNA upstream 371199 15372772 ~ 15379206 (-) True G184818
TU250440 lncRNA upstream 383141 15384714 ~ 15387101 (-) True G184816
XM_015606302.2 mRNA downstream 612846 14338714 ~ 14340598 (-) True LOC103042598
XM_022681550.1 mRNA downstream 745758 14200223 ~ 14207686 (-) True LOC103033946
XM_007230178.3 mRNA downstream 754847 14187676 ~ 14198597 (-) True lurap1l
XM_007230172.3 mRNA downstream 865110 14063644 ~ 14088334 (-) True LOC103032041
XM_007230171.3 mRNA downstream 894809 14050730 ~ 14058635 (-) True drap1
XM_007230302.3 mRNA upstream 257804 15259377 ~ 15261518 (-) True LOC103043225
XM_022681986.1 mRNA upstream 263535 15265108 ~ 15303915 (-) False LOC103042179
XM_015606580.2 mRNA upstream 263535 15265108 ~ 15303915 (-) True LOC103042179
XM_022681988.1 mRNA upstream 263535 15265108 ~ 15303915 (-) False LOC103042179
XM_022681991.1 mRNA upstream 263535 15265108 ~ 15303914 (-) False LOC103042179
TU249876 other downstream 836988 14063657 ~ 14116456 (-) False LOC103032041
trnas-gcu_6 other downstream 861854 14091509 ~ 14091590 (-) True trnas-gcu_6
trnas-gcu_5 other downstream 863657 14089706 ~ 14089787 (-) True trnas-gcu_5
TU249668 other downstream 1358691 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other downstream 1358691 13551270 ~ 13594753 (-) False LOC111195226
TU250431 other upstream 375794 15377367 ~ 15380444 (-) False smim18
XR_452782.3 other upstream 376135 15377708 ~ 15381208 (-) False smim18
TU250482 other upstream 664538 15666111 ~ 15671936 (-) True smim14
trnaw-cca_46 other upstream 1575250 16576823 ~ 16576895 (-) True trnaw-cca_46
trnar-ucg_6 other upstream 1575352 16576925 ~ 16576997 (-) True trnar-ucg_6

Expression Profile