RNA id: TU250099


Basic Information

Item Value
RNA id TU250099
length 1594
RNA type TUCP
GC content 0.47
exon number 2
gene id G184594
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15259376 ~ 15261534 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agaaggtcaatgttaattttattacaaatttacattaaaaaaagaataccaCTGTCAGATATAGAAATGTCAGAAACATCAAAGTTAAAAGAGTGTTCATACTGTTCACTAATTCTCAGCAGTGAAAAGTATTAGTGATACATAACACCATAATCtatgtttattaaatgtgttcaactAAACCCAACCTGACAATCTCCAACAATCAACATAAGTCTGTAGTCTAAAGTGATCCACTAGAGAGAACTGTTTCGTTCACTAGTATGGATTTTTATGCGCAAATCACTCAACACGTTGTTTTCTATGGTATTTTCTTAGGTTAGTATAGTATTTCCAGAAAATGTAGTTTCAGAGGTCTTATTGAATGGAATTACATAACtttttacaacagttttttttttttcatttgtggtTCGTTATTACCACAAAGTGTTATCTCAATTATTGAACagaaatttgtatttaattaaaaaaaagatttttattattgctccaaactaaaaatacaaaattagaaaaatattcTATCACTTTTTCTTGTTAAGGATGTTAGTGTTAACCGAGGTTTTCTGACATACATAcataggcacacacacacacacacacacacacacacagttcaggTCCCTGGGGGATGACTTGGCTGGAGGTCCAGAAGACTCTGAAAGTCTCCTATACTGTGGGCCAGTGTAAGTAGTTACTGGTTTAGAAACCAGCCGATGAAATAGGCGCAGACGTTCTGGATGCCGCTCCAGCAGTACTCCTCTGCCAGTTTAGTAGCTCGGTTCTCTGGTTCTGTGGTGGGTTTTGCTGTGGTGGTCTTGCTGGGCTTGCGGGGCAGCACAGGTTTGGTGGGTTGTTTGGGGGTTTTGGGGACGGCTTTGGCCGCGGTTGGTGGTTTGGGGGTGGCGCTGGTCTTGGGTGGCTGTGGTTGTTTCGGCTGGCTTTGGCTGCGGTCCTGCGGAGCCGTCACTGGCGCTGAGGTGGTTGTCTTAGGCCAGGAATTGTGGAAGACCATCTGAGCTTCATCCCCAGCTGTGCGGCACATCTGTGGCTTGTAGACGCGGGGTCCCTGGCAGGCGTTGGGGAGCTTGCGCAGCTCCCACATGACCTGGGTGAAGTAATGGCGTGGGTTTTTGTTGTAAGGCCGGCACAGGTTGGGCTTGCCCAGGAAGTCGCACCAGTAGGACTTGCCCTTGTTCTTGCAGGAGACCCGAAGCTTGGTGAAGTCTCCTTGGCCAGAGATCACCAGCGTGCAGGAGTCCTTGGCTTTGGAGCTGAAGCGGATGGGCTCGTCCCAGACGCTGTTTGGCTGTTGGGGCTCTTGCTTGGCCTTGCTTGGAAGGCTGGGCGTGCTTTCGTTGGCATGTACGTTAGCCTGGTTGCTGTTATCTTGGTTAGCAACGCTTTGGCTGCTCTGGGCTTGGGCATGAATGACCCAAACACAGCAAGCCAGCAGGAGAACGGTGCTGCACGTTACCCTCATGGTGCAGGAGTGGAGACGGGGTCCCGGACAGTGGTGTTGACAGGCCGGAGtgtggctgagcagtgtgcaGAGGGGGTTGGACGTATGGACAAGGTTTATATACACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250094 lncRNA upstream 206502 15047753 ~ 15052874 (+) True G184589
TU250026 lncRNA upstream 294682 14964313 ~ 14964694 (+) True G184530
TU249765 lncRNA upstream 1183197 14073170 ~ 14076179 (+) True G184314
TU249752 lncRNA upstream 1200629 14050787 ~ 14058747 (+) False c21h11orf68
TU249754 lncRNA upstream 1205760 14050787 ~ 14053616 (+) True c21h11orf68
TU250112 lncRNA downstream 6223 15267757 ~ 15271324 (+) True G184601
TU250123 lncRNA downstream 48224 15309758 ~ 15340238 (+) True G184610
XR_002651557.1 lncRNA downstream 141963 15403497 ~ 15409104 (+) True LOC111195234
TU250141 lncRNA downstream 142034 15403568 ~ 15409112 (+) False LOC111195234
TU250142 lncRNA downstream 144489 15406023 ~ 15409112 (+) False LOC111195234
XM_022681551.1 mRNA upstream 4061 15249906 ~ 15255315 (+) True LOC103042902
XM_022681940.1 mRNA upstream 286574 14369025 ~ 14972802 (+) False ptprd
XM_022681939.1 mRNA upstream 286574 14421832 ~ 14972802 (+) True ptprd
XM_022681949.1 mRNA upstream 286574 14421832 ~ 14972802 (+) False ptprd
XM_022681950.1 mRNA upstream 286574 14421832 ~ 14972802 (+) False ptprd
XM_022681996.1 mRNA downstream 111174 15372708 ~ 15387110 (+) True gtf2e2
XM_022681552.1 mRNA downstream 305599 15567133 ~ 15614006 (+) True LOC103044150
XM_022682015.1 mRNA downstream 376156 15637690 ~ 15644386 (+) True lias
XM_007230223.2 mRNA downstream 412714 15674248 ~ 15681038 (+) True ube2k
XM_007230220.3 mRNA downstream 446739 15708273 ~ 15724018 (+) True n4bp2
TU249755 other upstream 1200629 14055317 ~ 14058747 (+) False c21h11orf68
XR_002651543.1 other upstream 1569661 13660147 ~ 13689715 (+) False LOC103025917
TU249593 other upstream 1713881 13535071 ~ 13545495 (+) False LOC111195141
TU249329 other upstream 3567440 11690901 ~ 11691936 (+) True G183996
XR_002651530.1 other upstream 3803003 11431984 ~ 11456373 (+) False clhc1
TU250296 other downstream 1191806 16453340 ~ 16486424 (+) False G184727
TU250295 other downstream 1219074 16480608 ~ 16486424 (+) True G184727
TU250318 other downstream 1292475 16554009 ~ 16554312 (+) True G184741
TU250312 other downstream 1299735 16561269 ~ 16568225 (+) True G184740
trnaf-gaa_11 other downstream 1361576 16623110 ~ 16623182 (+) True trnaf-gaa_11

Expression Profile