RNA id: XM_022681640.1


Basic Information

Item Value
RNA id XM_022681640.1
length 1701
RNA type mRNA
GC content 0.46
exon number 8
gene id uchl1
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 1441450 ~ 1446518 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCAGCGCGTGCGCGGCGCGTGCTGGCTGTTATGATTTAAAATTTGGCGAAAAGTCCGTTACTTTTTTCCGTTGCCTTTTTTTCGCCGTTCTTTCGTTATTTTGCGGTATTTCTTCGTCCGGCGCTGCAGCCGCGGACCGGGCGAGATTTGTGGGTCCAGACACGGTCCAGACACACACCCACCACCCCCCTTCATCTGAGGAGAAGTGGAACATGACCGGCCGCATATCAACCGCGTGCGCTGACGGACGCTGTTAGAGTTTAGCTAGTTGgatttctgtgttttcttcttcttttgttagCCTGGTTAGCATTTACCTCAGAGAAGGAAAACGCGACCCTAAGCTAATCTAATTAACTGTTAGGTTATAGCTAACTGTTACTCAAAACCTGCGGACATGGAGTGGAAACCGATGGAAATAAACCCGGAGGTGCTGGGTAAATTGGGGGTAGGAGCAGACTGGCACTTTGTGGACGTGCTGGGTTTGGAGGATGAAGCATTGTCTGGGGTGCCCACGCCCTGCTGCGCATTGATGCTGTTGTTTCCTTTAACACAACAGCATGAGCAGTTCCGCTCTAGTCAGTCAGTGGATGGCAGTAAGGATGTCTACTTTCTGAATCAGACTGTGGTGAACTCCTGTGGAACTGTGGGATTGCTGCATGCTGTGGCCAACAATCAGGATAAGATGACATTTGAAGCAGGCTCTACCCTCAAGAAATTTCTAGAAGAAACAACTGGGATGTCCCCCGCTGATCGTGCTAAACAACTGGAGAAAAATCAGGCAATCCAGCAAACCCATGATGAAGTTGCAGCTGAGGGACAGTGCCGTccTGAAGCAGACAAAGTGAACTTTCACTTCATCACCTTCGCCAATGTTAGTGGTCAACTTTATGAGCTTGATGGCAGAATGGAGGGGCCTGTAAAACATGGTGCAACAAAGCCTGAGACCTTTATCAtgGATGCTGCAAAGGTGTGCCGTGGCTTTACTGAGCGAGAGAAAGGAGAAGTGCGTTTCTCAGCGGTGGCTCTATGCAAAGCCTAAAGATGACCAAAACCACACGGCCAAGCAAGGAGCAGCCGACCAAAAAAAATCCCCACCTTCACTGTCATTCCCTTTCAGGCCAGAGCACAGACGTCCTGCACAGTCTCGTCAAAACTGCCTGTTTGCCTGCTGGTGAATCTCAACACTGCTATATCTGTAATTAATCTTAGCATTTCAATCTGCCACAACTGCCAAGCTTTTGTTCTTGCTCTTGGTATGTTGTATTTGTAGTTTTTGCACAAGTGCCTTATTGGGCacaattgttttctttttttgtgtttagtttGTTAAACTGTCAACTTTAATCTTAAGGAGTGTCTAGTTTGGATCTAATGTGTACAGTTAGGTCATCTGGGTATAATCTGGATTGCGTGTGATCTGATGAGCATGCTGTACTGGGTTTAGTTGATAATAGCTGTGATGTGAATAATAGATACTGTGGGAGTTGCTGTGATGCTGTTCTGTTTTATTCCAGAACTTTCGTTGCCTCTTAAAGCCCAAGCActtagtatgtatgtatgtgtgcctGGATGAGTGAGTGGATGTGCGAGAGAGTAAAAGCAGACATGTTTATCCCTTTTGTTGCACACAGGGAATGTGTCTCCATTGCTGTTACTGTTGATGGCattgaaaagaataaaaaaatgattcacTGGA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246429 lncRNA upstream 63231 1375197 ~ 1378219 (+) True G181982
TU246428 lncRNA upstream 63231 1376360 ~ 1378219 (+) False G181982
TU246391 lncRNA upstream 447481 915260 ~ 993969 (+) True LOC103046702
TU246448 lncRNA downstream 100683 1547201 ~ 1549028 (+) True LOC111195170
XR_002651504.1 lncRNA downstream 101707 1548225 ~ 1554782 (+) False LOC111195170
XR_002651505.1 lncRNA downstream 104921 1551439 ~ 1554782 (+) False LOC111195170
XR_002651503.1 lncRNA downstream 104948 1551466 ~ 1554782 (+) False LOC111195170
TU246443 lncRNA downstream 105029 1551547 ~ 1554782 (+) False LOC111195170
XM_022681636.1 mRNA upstream 28712 1391425 ~ 1412738 (+) False LOC103025599
XM_022681634.1 mRNA upstream 30131 1391411 ~ 1411319 (+) False LOC103025599
XM_022681633.1 mRNA upstream 30131 1391425 ~ 1411319 (+) True LOC103025599
XM_022681635.1 mRNA upstream 30131 1391436 ~ 1411319 (+) False LOC103025599
XM_007234577.3 mRNA upstream 288407 1148098 ~ 1153043 (+) True lrrtm1
XM_022681644.1 mRNA downstream 1184 1447702 ~ 1517348 (+) False LOC103024236
XM_022681645.1 mRNA downstream 1184 1447702 ~ 1517348 (+) False LOC103024236
XM_022681642.1 mRNA downstream 1184 1447702 ~ 1517348 (+) False LOC103024236
XM_022681641.1 mRNA downstream 1185 1447703 ~ 1517348 (+) True LOC103024236
XM_022681643.1 mRNA downstream 1185 1447703 ~ 1517348 (+) False LOC103024236
TU246236 other upstream 1049320 391614 ~ 392130 (+) True G181818
TU246214 other upstream 1155169 282076 ~ 286281 (+) True G181801
TU246212 other upstream 1163277 276671 ~ 278173 (+) True G181799
TU246178 other upstream 1241454 191957 ~ 199996 (+) True G181779
TU246772 other downstream 1011776 2458294 ~ 2460322 (+) False LOC103029952
TU246773 other downstream 1079251 2525769 ~ 2569294 (+) True LOC111195173
TU246909 other downstream 1809849 3256367 ~ 3258850 (+) True G182356
TU246914 other downstream 1841420 3287938 ~ 3290258 (+) True G182361
TU247191 other downstream 2977395 4423913 ~ 4431946 (+) True G182577

Expression Profile