RNA id: XM_007229284.2


Basic Information

Item Value
RNA id XM_007229284.2
length 1621
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC103027206
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 202308 ~ 207014 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTATCTGGCAGTGTTGCGTAGTCTTACCTCTTCTCATAACTGCTCCCACCTTAGATGCACGTGCTATAGCCCGCTCATTATCTTGTCTTGATCTGGattcaatttttcatttttttttttgttccacgTGGATCACTTAAACGCACGCATTATGAGACCTCTGCTGCCCCTGTTTGTGAGCACCATAGGCTTGATCCTTTCCATTGCTGCTGTTCCTGGGACTTgccaaaacacaacaaatgCAACTAGAAGTACACCCTTTATGATGTCCACCATTCCTGCTCGAATCAGCCAAAACACAAGTGAAGAGGCACCTAAAACCACCTTCTCTGAAACTGTACACATAGCGACGAAAGACACAAAAACGTCAGCGAGTGCTCAAACTCAAGCTACCAAGACAACTAAAACCTTCACGACCACAAACCGGCGTCAGACCAAATCACAAAACTTAAAACCGTCAGGCTCCTCAGGCTCAGTGGTGGCAGTATTGTTCTTCATCCTGCTGCTCCTCATCCTCTTGGTCATCTTGTACAGATGGTACAAGAATAATCCCGAGCGTCGCTCCTGCCGTGGGCTGCGGGACAGCGTAGTGGAGACGGCGCAGTGCGCTTGGGCCGCAGCGATGGCATGTCTTCAGCATCCTCAGAAACAACCTGGGCAAGCAGAGGACGAAGACGAAGAGGAAGACGAAGAGGACAACGAGGAGGCGGTGGTGGTGGAGATGGAGATACAGGAGAGTGATGGAGGGCAGAAGACGGAAAGAAAtggcaaagaagaagaagacgggGCGAGAAAAAACGAGGACGACGCAAGTTCTGATTCGGAAACCTCCTCCGAAGACTACTCGTTCGTAGAGGGTGGCAACGTGGCAGATGACGAGAATCAAAATGATGGAGATGAGGGGTCCGGGAGGAGCAACAAGGAGGAGACAGAGGAAATGACGTCGGTCAAGTTAGACGACGAGGAGGAAGCGGAGAAAGCAGAGCCGGAGGAATCGGATGATCTTACGCCACTGTGAAATGTGCTGAAGATAGGTGATGGAAGTGGATGAATATAAGGGAtgctatccaatgaaaaacatgtatatttatttgatttttttgtccGTTATTTGGGTTTACCATCGTTTTAACATCGTAGCTGCTCTGTTTACTGTGCAAAGAATTGTGgatgaatacaataaaagaccaaaaaaatactCTTTGGGGGTTTTCACCAATAGTTCACTTCTATAATCCTAATTAGTCAACAGGTTTGTTACCTTGAATTGTTTCTTAGGTTAAACTACACCTGTATAGTCTTTTGGCTCAAACATGAGGAGTATATATATGATCGTTGGTGTGGTTGGATGGTGACTAAAACAAggcacataaaaataaaaatacaaacaaaccaaagtcaagttttaaccggaccaaatagtgcttttttttggagatacatgtttttcattggacagcaacaatataaatGGGTTGGAtgacaaattaaatattttaggattTAGGATTTTAGTTTTTGTATGATAGACCAACATGCACTCTAATGTCTAATGtgctagcaaaaaaaaaaactgttttaaaaaacgtgtttacataaaaaagaaaacatgtaaaaaaaa

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0002521 leukocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0001775 cell activation biological_process
GO:0030217 T cell differentiation biological_process
GO:0002376 immune system process biological_process
GO:0046649 lymphocyte activation biological_process
GO:0048884 neuromast development biological_process
GO:0045321 leukocyte activation biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246179 lncRNA upstream 7371 191957 ~ 194937 (+) False G181779
TU246176 lncRNA upstream 36264 163629 ~ 166044 (+) True G181777
XR_002651501.1 lncRNA upstream 108539 93165 ~ 93769 (+) True LOC111195166
TU246136 lncRNA upstream 173319 27415 ~ 28989 (+) True G181750
TU246174 lncRNA downstream 732 207746 ~ 208523 (+) True G181775
TU246186 lncRNA downstream 4821 211835 ~ 231061 (+) True G181782
TU246184 lncRNA downstream 13062 220076 ~ 231061 (+) False G181782
TU246208 lncRNA downstream 61688 268702 ~ 269257 (+) True G181797
TU246210 lncRNA downstream 64540 271554 ~ 273833 (+) True G181798
XM_022681614.1 mRNA upstream 94418 65881 ~ 107890 (+) False LOC103030568
XM_022681611.1 mRNA upstream 94418 65882 ~ 107890 (+) True LOC103030568
XM_022681613.1 mRNA upstream 94418 65882 ~ 107890 (+) False LOC103030568
XM_022681615.1 mRNA upstream 94418 65882 ~ 107890 (+) False LOC103030568
XM_022681612.1 mRNA upstream 98850 65881 ~ 103458 (+) False LOC103030568
XM_022681619.1 mRNA downstream 38452 245466 ~ 247320 (+) True LOC111195167
XM_022681620.1 mRNA downstream 43462 250476 ~ 256183 (+) True LOC103031511
XM_022681623.1 mRNA downstream 51877 258891 ~ 264780 (+) False LOC111195169
XM_022681622.1 mRNA downstream 51879 258893 ~ 264780 (+) True LOC111195169
XM_022681573.1 mRNA downstream 82322 289336 ~ 291542 (+) False LOC111195149
TU246178 other upstream 2312 191957 ~ 199996 (+) True G181779
TU246212 other downstream 69657 276671 ~ 278173 (+) True G181799
TU246214 other downstream 75062 282076 ~ 286281 (+) True G181801
TU246236 other downstream 184600 391614 ~ 392130 (+) True G181818
TU246772 other downstream 2251280 2458294 ~ 2460322 (+) False LOC103029952
TU246773 other downstream 2318755 2525769 ~ 2569294 (+) True LOC111195173

Expression Profile