RNA id: XM_007230153.3


Basic Information

Item Value
RNA id XM_007230153.3
length 5290
RNA type mRNA
GC content 0.44
exon number 11
gene id slc24a2
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13735246 ~ 13785212 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCGTTTCTTCTAAAACGTGTCGCGCTGCGGAGCTCCGCCCCCAAACATCATCagcatcttcatcatcatcatcgcccTCACCATCCGGACACGAGCAAGAGGCGCGCGAGGCAGGACGCGCGAGCGTGGGTCTCCaacgagctgctgctgctgacggTCTGTGGATGCACTATGAGGAAGCCACTGGAGTGCTGAAGGACATCTGGATTCGCTTGATTTCCTGCACAGCGACAGCAGCATGTATGGTATGTGATATGTTTGCCGGGCACGCCCTGACACAGTCTACTTGCTGAGTGTACCGCCATGGGTCAGCGATTGCCATGCGTCCGGAGGAAGCTGCGACCCGCCCGAGTGCTCACGCTCCTCCTCGGCCTCCTAGCAATAAGCTCCGTTCCCTTCTCCCTCCGTGCCTTCTTCTCATGGGGCTCGACCTCCCAGTGGGAGGAGTTGCAGGGACCCGCccctcacaggacactgctctcCACTCAGGTGGATGGCAATGGTAACCTCTCGGAAGACATGCCCCAGGCCATGCCAAGGTCGGCATCGGCTGAGGCCAATGAGAGCCAGGGAGATTATCCAGAGGACCTGTTTTCGCTGGAGCAGAGGCGCAGGGGTGCGGTGGTGCTGCACATGATTGGCATGCTCTACATGTTCATCGCCCTGGCCATCGTCTGTGACGAGTTCTTCGTCCCTGCTCTGACTGTCATCACCGAAAAACTGGCCATCTCCGATGATGTAGCCGGTGCCACCTTCATGGCCGCCGGAGGTTCAGCCCCCGAACTCTTCACCTCTGTCATTGGTGTGTTCATCTCACACAGCAACGTGGGCATTGGCACCATCGTGGGGTCAGCCGTCTTCAACATCCTCTTCGTGATTGGGATGTGCGCTGTCTTCTCAAAGGAGATCCTGAACCTGACGTGGTGGCCCCTCTTCCGGGACGTGTCCTTCTACATCCTAGGCCTGATCATGCTCATCGTCTTTTTCCTGGACAACTACATTAGCTACTGGGAGAGCATCGCATTGCTGACGGCTTATGCTTGCTACGTGATCTTCATGAAGTACAATGGTCAAGTGGAGATGTTCATCAAGGGTCTGATAAACCGCAATCAGGTTGTAGAGGTGGTGGAAGCCCCGCCTAAGgttAGTCCAGTGGCAGTGGATGATGAGAGCAAAGTCTCGGCCAAGCCCCGACTGCAGCGAGGGGGCAGCTCGGCCTCCCTGCACAACAGCCTGATGAGAAACAGCATCTTCCAGCTAATGATCCACACACTAGATCCGCTTAGCGAAgAATTTGCTGATTCTGGAAAGTTCCGTGAGAAGGCCTCAATCCTGCACAAAATTGCCAAAAAGAAGTGCCAAGTGGAAGATGCCAATGGAGTGGCTGaTAAGAATCTTCCAAACAGCTCCAATGTGGAGGTGGAAGTGACTCCGCCTCTGAATGGCACGGCGGGGCAAGAGGGCGACACGggtgaagaagatgaagaagatgatCAGCCTCTCAGCTTGTCTTGGCCCGAGACGTGTCGCAAGCGCTTCACGTACCTCTTCATCCTTCCTATTGTCTTTCCCCTGTGGATCACGCTTCCTGATGTCAGGAAACCCACGTCCAAAAAGTTTTTCCCCATCACGTTTTTGGGAGCAATCTGCTGGATCGCTGCATTCTCCTATTTGATGGTGTGGTGGGCTCACCAGGTTGGTGAGACAATCGGCATCACAGAAGAGATTATGGGTCTGACAATGCTGGCAGCTGGAACCTCCATTCCGGACCTTATCACCAGTGTCATTGTGGCACGGAAAGGCCTCGGGGACATGGCTGTGTCCAGTTCTGTAGGCTCCAACATCTTTGACATTACAGTGGGGTTACCGTTCCCATGGCTCTTGTACTCTTTAATAAACGGCTTGAAGCCCATAGTGGTGAGCAGTAATGGGCTCTTCTGTGCCATTGTGCTGCTCTTCCTCATGCTCCTCTTCGTCATTATCTCCATTGCGGCCTGCAAGTGGAAGATGAGCAAGCTGCTGGGCTTCATCATGTTCCTCCTGTACCTCGTCTTCCTGGTGGTCAGCGTTATGCTGGAGGACAAAATCATCGTCTGCCCCGTTTCCATCTGACCtttacaatcacacacacacaaacacactcacacacacatacttgttCACGGACAGTCAATAAGCCTGTGAACCATCCTCTTCAGAAGCCTCGTTCATGTCTATTTAAACCTTGCATCGTTACCTGATGACCACCCATGCATGGCGTTTTAATCAGTAGGAGCGGATGTTCTCGGGAGGATTCTTCTTTATGGATGCTGGCTCTGCTGCATTTAGTACTTGTTGGTTTTGGAAAGGTGGGAATTCTTCAGTTGAAGTTAAGTTTGCCTCTAGTGTTGGGCAATGTGTCAGATTGTGAGTGGCTTAGCACACTAATACTTTAGCCCGTGAGTGCAAATcctgggtcatgctgcttcagcatcagcagccagagcccgaGAGAACCAGGTCACATTCAACCATGCTCTCTCTGCAcgggtagatggcgctgtctCCCTTTATCACTCTGAAACACTGTTGTGATGCTGGCCGTTACAGAGCAATTTAAcagtctgttggctgatgtatgagagctggggatctggtgctttcctcAAAGCATACTGactgcctagtgatgctgctGTATGAGGCGATGTCTGTCTTCACATCCACTTGCCCTCAGCCTTCTAATGTCGGGAGCATTGTAAGTGGTAGGATGTTGGTTAGTGAGTGGGTGGGTTAATTGGATCTGCTAAATTAGagggaaaatatttatttaaaaaatatacatgtaaataaataaattaatcctgaaataaaataaaatctgtccGCTTAATTAGAATACAGTCAATGcaacttttattattaagttcTTTTTACCAAAGTCAGTTTTGAAATTAATCAAAATTGTGAAAGCCAATAGATGTTCAGTTATTAAATGAATGTAGGATGCTACTGTGCTCAACACAGTAGTTAAACTAAAAGTCccaattatgtaaaaatatacataatctatatctttttttcatgAATGATCTTATCGGAATTAAGCAATATTGCTCAGTACTAGGGGCTTACTTTTAATCCAGGAAAAATGATGGAGAATTGGAATGTGTGAGATTTGCTATGCACTGCATTTGATTCATTGAATCCGATGCTTCTGGAAAAaaactcaaactttttttgggggaCTTTTCTTCGCACCTGTATCAAAGTGGTCCCCCCTCAAACTTTCAGTGGTTggaacagcagcagctgaagACGACTCTTCTTCATGTTCTCACTGAACACTTTGTGGTGTTGTGGCTCAACTTTTGTCTtttgtgaaaacacacacacaaacacatggacTGCGAGTTCAACACTATCAGGTGACAGGGATCACCTCAGATTCTGTAGATGAAGATTGGCTGAAGAAGGCTGCATTTGGAATCAGGATGACATTTTGGATTTTGGAACATGCGCAGGGTCGCACCAATGTTAATTTATctaattatgtatttatgtactatttatttacttatttaaatgatttttttgattgttttttcgCTTATTTGCAATTTTACATGCTCCAGCAGTTGATATAGTAGGTAGGTAGAGATAGGTAGGTAAACCGCAGTATTGCCAAAAgcataaaagaagaaaaaaaaaaaactctgaacaAACTGTGAGTACTGACTGAGTACTCCCACCTCCCATCCTTTAAATCATTCTTATTCTTATCAAACGTATTGACTGTTCGTCAGTTAACCTAGATTAGACTCTTCAGAtactgagagaaaaaaactctTCTTATATATGTAAGGGAAAACCATTCTTATCATTCccttggataaaaaaaaaaaacaaaaaaaaaacaaataacaaatagcAGAAAAAGGCTTAAATAGATGCTCCTAGGCATAGCTCAGTGTCAGACTAGCCTGTAGATATGTACTCTCTTGCATTCCTCAGCAGAAGATGCTATGTGCAATAATAATCTTCTTAAATACTCTCGGATCGTACTTGGAGCGCTCAGTGTATTCCGAACGGTGGATTTTGGCGagttcaataaaaacatgttaGAAGTAGGTTTTTTCCTTGTTTCAGAAATGCATAACATTACATTCATGTACATGTATGTGGCCTAATTGATTGTGAGATTGTGCATATTGCTTTAATCTCATGatgatatacattatatattaaattattcaaagCTGCTGCGGCCTGATCTCACAGTAACATCCACATTGGTCAATTTTAAATGGACTCCTTTTCCATTCACATTGTTTAGAGCAAATTTGACCTCTAGTTAAGGTAGAAATTACATACAGATGATAACCTTTAAGGCTGATTTATGCTGCTGAGTCAAACCATAGCAGAGTTGACACCGTTGTAAATTGGTGTGTCTGCATTTCtctgaaaacacaaacacaaaacaccacaAGTGATGGCGGATGAAACTGATCCAGTGTTACTGAAACCAAGCAAAATGTactttgtttatctttatctaAGCCTTTACACCCACTTTAATCTATACCTAAATTATTAACCCTTAATCTGTACCTGAATCTACATCTAAACCCTGATCCttacctacaccttaatctacaccaaAGCCTAACCTTGATgtacaccttaatctacactttaatacagtttaccctacacaaaaaaactaataaattaataaaataaactagaCCTCaatctacacctaacccttttCCTAACTTAGCTTTTCTGTACATCCTTAAGCTATAACCAAACTtaatcttaacctaaacttaacctacagcCTAATCTAcatacaaacataataaaaatgtaaagaacagaATTCTCTTTAACAGCATTTAGCAGTTTTCCGATTTCTTCTTTGATAATATGATGATGGCCaggctgtttgtgtgtttcattCGCCAGCTCTATTAGTAGGTGGTTAAAAAACACAGCTAGAGACAAACAATTGAAACAATTGACCAATATGGATGTTTCTGTGTGAAATCATGTTGTAAAagaaatctatttatttatttattttgagatGTCTCACAGTCtcccaaccttttttttttggtttggacTGACCTGTGCGGACTGAGTGCAGTAAGTGATACAGTCTGCAGTGGCACTGATTGCCTTCGCACTGCTACAGACTTGTACAGAATTCAATGATATGGATTCACTAATCAATGGTATAGTCTTAGTGCTACTGACTCAGTCCACTCACATTTCAGTACAGAGATTAGTATAGActcctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249704 lncRNA upstream 5304 13724756 ~ 13729942 (+) True G184268
TU249611 lncRNA upstream 144172 13558816 ~ 13591074 (+) False G184203
TU249607 lncRNA upstream 170715 13558816 ~ 13564531 (+) True G184203
TU249613 lncRNA upstream 170715 13558816 ~ 13564531 (+) False G184203
TU249605 lncRNA upstream 185201 13548825 ~ 13550045 (+) False G184201
XR_002651545.1 lncRNA downstream 666 13785878 ~ 13801142 (+) True LOC111195229
XR_002651544.1 lncRNA downstream 16145 13801357 ~ 13827701 (+) True LOC111195228
XR_002651546.1 lncRNA downstream 196836 13982048 ~ 13997645 (+) True LOC111195230
XR_002651548.1 lncRNA downstream 196836 13982048 ~ 13997645 (+) False LOC111195230
XR_002651547.1 lncRNA downstream 196836 13982048 ~ 13997645 (+) False LOC111195230
XM_007230299.3 mRNA upstream 25603 13707689 ~ 13709643 (+) True LOC103042284
XM_015606429.2 mRNA upstream 44082 13660149 ~ 13691164 (+) True LOC103025917
XM_007230148.2 mRNA upstream 44082 13660149 ~ 13691164 (+) False LOC103025917
XM_022681931.1 mRNA upstream 80973 13630542 ~ 13654273 (+) True hgfac
XM_022681548.1 mRNA upstream 189753 13535062 ~ 13545493 (+) True LOC111195141
XM_007230160.2 mRNA downstream 44618 13829830 ~ 13856036 (+) True heatr5b
XM_007230165.3 mRNA downstream 71757 13856969 ~ 13906069 (+) True LOC103029182
XM_007230161.3 mRNA downstream 71757 13856969 ~ 13905969 (+) False LOC103029182
XM_007230162.3 mRNA downstream 71757 13856969 ~ 13905969 (+) False LOC103029182
XM_007230163.3 mRNA downstream 71757 13856969 ~ 13905969 (+) False LOC103029182
XR_002651543.1 other upstream 45531 13660147 ~ 13689715 (+) False LOC103025917
TU249593 other upstream 189751 13535071 ~ 13545495 (+) False LOC111195141
TU249329 other upstream 2043310 11690901 ~ 11691936 (+) True G183996
XR_002651530.1 other upstream 2278873 11431984 ~ 11456373 (+) False clhc1
TU249184 other upstream 2303320 11429171 ~ 11431926 (+) True G183892
TU249755 other downstream 270105 14055317 ~ 14058747 (+) False c21h11orf68
TU250099 other downstream 1474164 15259376 ~ 15261534 (+) True G184594
TU250296 other downstream 2668128 16453340 ~ 16486424 (+) False G184727
TU250295 other downstream 2695396 16480608 ~ 16486424 (+) True G184727
TU250318 other downstream 2768797 16554009 ~ 16554312 (+) True G184741

Expression Profile