RNA id: XM_007230160.2


Basic Information

Item Value
RNA id XM_007230160.2
length 7993
RNA type mRNA
GC content 0.51
exon number 36
gene id heatr5b
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13829830 ~ 13856036 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCTGACGCTGCCTGACGCAGGGGTGGCTAGCTGGGTTAGCTTGGAGGCTGGAGACTGTCACCAGTGTATCTGAGGTGAAGCAGTCACTTAGTAAAAGAGACCTGCCTTCAGAAGACCCCCTGGCTGCTTTCAGTGCCCACTAATGGAGCTGGCACACAGTCTCCTGCTCAATGAAGATGCCCTGGCCCAGATCACAGAAGCCAAGAGGCCAGTCTTCATATTCGAGTGGCTTCGGTTCCTCAATAAAGTTCTCGTAGCAGCTAATAAGGTTGATGTGAAGGAGAAGCAGAAGAAACTGGTGGAACAGCTCACTGGGTTGATCAGCAGCAATCCTGGACCCCCTACGAGAAAGCTATTGGCTAAGAACCTCGCTACACTCTACAGCATCGGCGACACTTTCACCGTCTTCCAGACGTTGGACAAGTGCAATGACATCATCAAAAACAAGGATGACACTCCAGCCTATCTGCCCACCAAGCTTGCTGCAGTGGCTTGTGTTGGGGCCTTCTATGAGCGAATGGGCCGGATGCTGGGCAGCTCCTTTCCAGAAACAATCAACAACCTTCTGAAAGCCCTGAAGAATGCAGAGTCTCAGGGCCGCAGTGAGATCCTCCTCAGCCTGCAGAAAGTTCTCAGTGGCCTGGGTGGTGCTGCTGCATCCTGCCACAGAGATATCTACAAGAATGCCCGCTCTCTCCTCACTGACAGGTCCATGGCTGTGCGCTGTGCTGTGGCTAAGTGTTTGCTGGAGCTGCAGAATGAAGCGGTGTTCATGTGGACCACAGAGCTGGAGAATGTGGCCACGCTGTGCTTCAAAGCTCTTGAAGGCTCTACATACGGCGTGCGCGTGGCTGTGTCCAAGCTGCTGGGAACTGTAATGGCTACTGCACTCTTGCCTAAACAGGCTGCAGTTATGCGTCAGAATGTGAAGCGAGCCACACTGGAGGAGGTGCTTGAGCTGATGGCCACAGGTTTTCTGCGAGGGGGTTCCGGATTCCTGAAGAGTGGAGGAGAGATGCTGAAAGGAGGAGGTTCAGTCAGCAGGGAAGTCCGAGTTGGAGTCACTCAGGCATATGTAGTGTTTGTGACCACACTGGGCGGTCAGTGGCTGGAGAGGAACTTTGCCACCTTCCTGTCACACGTATTAGAGCTGGTGGCTCACCCTCGGGCCACACAGACCCACGTAGAGGCAGTGTACTCGCGCCGCTGTGTCTCTTTTGCCTTGCGTGCCACACTAGGAGGCCTGCTGGGGGAGAAGGCCCAAATTGCTGCCGCCAAGGAGATCTGCCAGGCCATCAACAAGCAGATGAGGGCAGTGGAGGCGGTAGTCAGTGACAGCAGTGGTGAAAATAAGGGTGGGGCTGCGGACGTGTCGGCCAGTCAGCACGTGATGGTGTGTGCTCTGAAAGAACTGGGCAGTCTGGTCCAGAGCCTCAGTGCTACAGCCTCTCCACTCATACAGGAGCCTTCTAttgGTCTGTTGGAGACGGTGACGTCGGTCCTTCTGCACCCCAGCATGGCGGCCCGTCTGGCAGCAGCGTGGTGCCTGCGCTGCGTTGCCGTGGCGCTGCCCTATCAGCTGACCCCTCTACTGGACCGCTGTGCCGAGCGCATCAACACCCTGAAGAGCTCGCCTGAAGCCGTCAGCGGCTACAGCTTCGCAAtggctgctctgctgggtggaGTGTACCAGTGCCCGCTGGGTATCCCCCACTCCAAGGGCAAGATGGTGGTCAGCATAGCTGAGGATCTGTTGCGTTCCGCAGCTCAGAACAGTCGTCTCTCTTTGCACCGAACGCAGGCTGGCTGGCTGCTCCTGGGAGCCCTCATGACTTTAGGATCATCTCTGGTGCGCTACCACTTGCCTAAGATGCTGTTGCTCTGGCGGAATGTGTTCCCTCGGTCGCAGAAAGAGCTGGAGGCTGAAAAAGCCAGAGGAGACTCCTTCACCTGGCAGGTCACTCTGGAGGGCAGAGCTGGAGCACTTTGTGCCATGCGAAGCTTCGTGGCTCACTGTCCCGAGCTGCTGACTGAAGACGTGATCCGCAGGCTGATGACTCCTATTGAATGTGCCATGACCATGATGTCTCATATTCCTGCAGTTATAAAGGTACATGGAGCTCACCTAAAGGCCAGTGCTGCTATGGTGCGTTTGAGACTCTACGACATTCTGGCCCTGCTTCCGCCCAAGACTTATGAAGGCAGTTTCAGTGCTCTTCTGAGGGAGCTGGTGGCTGAGTTTACACTGACGGATAATTCAGCCAACACAACCACCTCCTTGTTGCGTTCACTTTGTCACTATGATGACAGTGTCCTCATGGGCTCCTGGCTGCAGGAAACTGACCACAAATCCATTGAGGACCAGTTGCAGCCTAACAGTGCATCAGGCAGTGGTGCTCTGGAACATGACCCCTCCTCCATATACCTGCGAGTTCCTGTTGGAGAAGCTATCCCAGGCCCGCTCCCACTGGGTGTCTCAGTTATTGATGCGTCTGTGGCACTTTTCGGTGTAGTCTTCCCCCATGTCTCCTTTAAACATAGGCTCCAAATGCTGGACCACTTTGCTGAGTGCATCAAACAAGCTAAAGGAGTCAGACAGCAGGCTGTCCAACTCAACATCTTCACTGCTGTCCTCAGTGCACTAAAGgGTCTAGCTGAAAATAAGAGTACGCTGGGACCGGAGGAGGTGCGGAAGTCTGCTCTGGCCTTGGTGATGGGTGCTCTGGATAACCCCAACCCCATCCTGCGCTGTGCTGCTGGAGAAGCTCTGGGACGCATGGCACAGGTTGTAGGAGAAGCTACCTTCATCGCCAGTATGGCTCAGCACAGTTTTGACAAACTGAAGTCAGCTCGGGACGTGGTGTCCAGAACGGGTCACTCTCTGGCTCTTGGCTGTCTGCACCGATACGTGGGAGGCATCGGGTCAGGTCAGCACCTTAAGACCAGTGTGAGCATTCTCTTGGCACTGGCTCAGGACGGAACCTCCCATGAGGTTCAGACATGGGCGCTGCACTCCCTGGCTCTCATTGTAGACTCCAGTGGGCCGATGTACAGAGGTTATGTGGAGCCCACTCTGTCCCTGGTGCTCACCCTCCTCCTGACTGTGCCTCCCTCTCACACAGAGGTGCATCAGTGTCTGGGCCGCTGTTTGGGAGCCCTCATCACCACTGTGGGCCCAGAATTACAGGGCAACAGTCCCACAATTTCGACCATTCGCTCCTCATGTCTGGTGGGCTGTGCCATAATGCAGGACCACTCAGACTCTCTGGTGCAGGCAGCGGCCATCTCTTGCCTGCAGCAGCTGCACATGTTTGCCCCACGTCACGTCAACTTATCTAGCCTGGTGCCCTGCCTCTGTGTGCACCTCTGCAGTTCTCATCTGCTTCTGCGTCGGGCTGCGGTGGCATGTTTGCGGCAGTTGGCTCAGAGAGAGGCAGCCGAGGTGTGTGCATACGCCATGAGCCTCGCCAAGAAAGCTGGAGACAGCAAAGAAAGCACCACTATCAACCTAAACATCACTGAGACTGGTTTAGAGGGTGTTCTTTTTGGCATGCTGGACCGGGAGACAGATAGAAAACTGTGCTCGGACATCCATGACACACTTGGCCATATGCTGTCCTCTCTAGCTGTGGAGAAACTCTCGCATTGGCTCAAACTCTGCAAAGATGTCCTGGCTGCCAGCACAGAAGTTGGAGGTGCCTTGGCATTTGAAgtagagaaagaggaggaagacTCTGAGAAGAAGGATGAGATGGACGATGACACCATGTTTACAGGCCTGGGCGATGACGACAAAACAAAGCCCTCTGTTGCCCCCCGCTGGGTGACGCGGGTGTTTGCAGCCGACTGCTTATGTCGCATCATTCATCTGTGTGAAAATGCAGACAAGGCTCACTTTGATCTGGCCACTGCCCGCAGTGCCAAAGCCAAGAACCCTaaaggtgatctgctggtgttgcaTCTTTCGGACCTGATCCGCATGGCCTTCATGGCTGCCACGGATCACAGTAATCAGCTACGGATGGCCGGCCTGCAGGCCCTGGAGGACATCATTAAGAAGTTTGCCTCAGTACCGGAGCCTGAGTTTCCTGGTCATGTGATCCTTGAGCAGTACCAGGCCAATGTTGGAGCTGCACTACGACCAGCCTTTTCTCCTGATACTCCATCTGACATCACAGCCAAAGCTTGCCAGGTGTGTAGTGCTTGGATAGGCAGCGGTGTAGTGAGTGACCTGAACGACCTCCGCCGTGTCCACAATCTGCTGGTGTCCTCCCTGGACAAGGTGCAGGCTGGCAAGGGCTCTTCCAGCCAGCTGTACAGCGAGAGTGCCACCACCATGGAGAAACTGGCTGTGCTCAAAGCCTGGGCAGAGGTGTATGTGGTGGCTATGAAAATAAAGAAGGAGGCGGAGTCCAGGCCGGCTCGTCCTGTGAGGAGcggtgaggatgatgatgaggacATGGGTGATGAAGGAGATATCCTGCCTCCGGACAGCCTGATCACGCTGGTGCAGCCAGAGCTGCCCTCGCTGAGCCGGCTGTGGCTGGCTGCTCTCAGAGACTACGCTCTGCTGACCCTGCCGGCTGAGTTTGCCAGCCAGCTGCCCCCTGAAGGTGGGGCCTTTTACACTCCAGAGACGATAGACACCGCACGTCTGCACTATCGCAACTCATGGGCTCCCATTCTGCACGCCGTGGCTCTCTGGCTTAGCAACACAGACTTTGGAGCTGCTGAGGGTCCTGAGGAGCCCCAAACTGGTACTACAAGTCCTGCATATCCTCAGGGGCCACCTGCTCCAATCAAAAACCCTGATGAGCTGGCCAAAGACAGAATGCATCTACTGTTGGGCATCAGTATTGAGTTCCTGTGCTTCCCTCGCCCTGAGGAGCCTATTGAACGAGTGATGTCCTGCCTTCAAGCTCTCTGCACGCTGCTCGAAACTCCACAGGCTCGAAACCACATCGCAGAGGACCAGTTGCTTGCAGTAGAGCTGCTAAATGTGCTGCACAGGCTGCTGTTAACCCGGGACCCTCCCAGTGTTCAGCTGCAGGTGACTGCAGTAGTGCAAGAGACCATCCGCTCAGCCCAAGACCACCTGGACCAGCGCAGGAGCTCCAAGGGTGTGGAAGATGGTGGGGAGAAGGAGTCGGCGAGTGTGTTGGCGGAAGGAGGGGACACTGGAGAGCTGCAGCCAGGGAAGTCTCTGGTGTTCGCTGCCATGGAACTCCTGGTGTTTCTGCTGGTGCGTCACCTGCCTCAGGTCAACACCAAAGCCAGCGACTCTCCCAGCCACCTGCCTACCAAACCCCAGCCTCTGCCCGAGCACAGCAACCGCCTGGTGGCCGTCACCATCAGCATCCTAGCAGAACTGCCTGCACTGTGTTCTCcagcagGGAGTATGACCATCCTGCCCACAATCCTGTTCCTCATCTGTGGAGTGCTGAAGGAGACCGCCCTGAAAACCCCCGATGGTTCAGTACCTCTGCCTGTGTCAGCCGCCCTGCAGGGCATTAAGACCATCATCACTTCCCCACTGGGCCGTGTGGAGAAAACGCAGCAGCAGTGGACCAGCCTGGTCAGGAGCAGTCTGGCTTCTGTGCTGGAGTACTCCCAACCTGATGAGTCCAGGCCCAATATGGATGAAGTGAGCCTGCTCACTGCAATCACTTTGTTCTTGGTGTCCACCAGTTCTGAATTGGTCGGGGTCACCACCTTACAGAAGGGCTGCATAGAACGCTTCAGAAATGCTCTCAACTCCAGTGACCCTTGGGTCCAAGCTCGGTGCTATCAGCTCCTCCTCTCCGTGTTCCAGCACTCGAGCCGCGCTCTCTCCACACCCTACATCCACGCTCTGGCTCCTATGCTGGTGGAGAAGCTGAAGGGGGCGGAGCGTGCAAGGCCAGGGACCCCTGCTGAGCTCCAGGCTGTGCAAGAAGGAGTTAAAGTGCTGGAGGGCCTGGTGGCCCTGGGAGAAGAGCAGAATCGAGTTCAGCTGCTGGCTCTTCTGGTGCCCACCCTGATCTCCTACCTGCTGGATGAAAATGCCTTCTCCACTGCTCCTCCCCCGTCCAAAGGGCTGCATGAGTTCGCCCTTCAGAATCTGATGCGCATCGGACCCCTGTACCCTGCTGCCTTCAAGACCGTTATAGGAGCAGCACCTGAGCTGAAGACCCGCCTTGAGACCGCCATCCGAGCCAACCAGGCGAGCAGCAAAGCCAAGGCCGCGGCCAGGCAGGCCCAACCCACTGTGCAAGCCACACCCACCATCAAACTCAAAaccagctttttctaaaatcagcTTTTCTCAACTGACTTGTCCTTGCTCATCTCAAAAAGGCATTCTTTTAAAGTTACTGTGTAGTTTAAACTTTAGTTTGGACAAGCTTTAAATATGATGATTGAAACAAAGTTGAATGATACAGTTTCTTATTGAGTTCAATCATTTTTCACCACTCTTCTGTAAAACTTGACCATTAGAATTAATTCCAGTTAATTTGAGGGAAGATCATGTAGTTCTCTGTTGatgtatgtttttattcaaGTAAACCAGTTAAATTTTGATTAAATGTGTGCTACACAGAGACTGTGTCAGTTGGGGTAAAGCTATGCTGTTATAAATATGGATTCCAGGGTTTATGCTTCATCGTGTCAATCATGTGTGCTGGTGAATGTCCGAGTGAAACCGTTAAAGGGATGTAGTTTATTCTGTCgtggtcattttttttctggaaagcTTGTGAAATGCACCTTAATCAGAACGAATATCATGGAAGCACCTTTTTTGTAAAGTCACATTGCATCAATGTTCTTTTTGACAATTCCAGCAGTTTttcttcattgtttttttttttttttggatcctGTAAAGACCAAAACATGCAGAGCTGTACAGTAAATGTGCTGTAATATCACACAATTCCTTTTCTCTTCTCAGCTAAAACACTCCCTTTTAGTTAAGCATTATTTAGTAGATCATTAGTTGTCAGAAATTTGCTTTTAGACTTCGGACGATTTTGTAACTGTTACATTGGATATAGAACTCTTATTAGGaaacaataatgataaaaaaacaaccaatcaTTCAGTACCATTTGTGTTGTACATAGAGAATTACAGTTAAAATGAAAGCTATGATATACTGTAAAGTcgttttattattactattatttttttttaacctttttcatttttatttgctatatacatacatttatattgtcactgttAGAAAATGTTTCAACAAATACTAATGCTTCAAAGTAATGGAAGAGCCAAAAGAAATGCTCTACAATTATGAACCTCCTAGTGTAAATACTGcaaaatgataaatggaccaGTAGAAATGCTCCAGATTGATGAATAACtgatagaaatgcttcaaaatgctGCATGAACTAATACTTTTGCTCCAAAATAATGGAATAGCCAATAAAAATGCTACACAGTGATGAATGGACCAGtacaaatgctccaaaataactTGGAATAGAACATTTTACTTTTAGACTTtctttgtaaatgtttaatttgcaacatgaacattttttttgcatgacggTGACAATATGACACTTGGATTTAGCTTgacttttattaacattattcaCTGTCCTGGATTAAATGTGATGAGCATCTCTCTCATGCCTCTTATTTACTTCTTCTCCATATTGTttgttgcttttgtttttgctttagtTTGAAtagtttatgtaaaaaaaaaacaacatgtaaACAGTTCCACATGATTATTTATTCACTTTAGATGAAGACTTGACATTGCATTAAGCAATTACAGTGAAGCTGCACAGTCATTCACCATGTTACAGTGTGAAGTTTTGGTATTCACCAAGTCTAGAATGTGTTCTtgtattgttgtttgtttgggGTTTTTATGTTGAGTGTGGAGCTGCACAGTATAATAAATTGAGTCACATCCGGGCTGTTGGCAAAGTGGACAAATtgatctgaaaaataaagaaggttttatttaac

Function

GO: NA

KEGG:

id description
K24814 HEATR5, LAA1; HEAT repeat-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651544.1 lncRNA upstream 2129 13801357 ~ 13827701 (+) True LOC111195228
XR_002651545.1 lncRNA upstream 28688 13785878 ~ 13801142 (+) True LOC111195229
TU249730 lncRNA upstream 86379 13743028 ~ 13743451 (+) True G184285
TU249704 lncRNA upstream 99888 13724756 ~ 13729942 (+) True G184268
TU249611 lncRNA upstream 238756 13558816 ~ 13591074 (+) False G184203
XR_002651546.1 lncRNA downstream 126012 13982048 ~ 13997645 (+) True LOC111195230
XR_002651548.1 lncRNA downstream 126012 13982048 ~ 13997645 (+) False LOC111195230
XR_002651547.1 lncRNA downstream 126012 13982048 ~ 13997645 (+) False LOC111195230
TU249719 lncRNA downstream 132856 13988892 ~ 13990906 (+) True G184274
XR_002651549.1 lncRNA downstream 143981 14000017 ~ 14000904 (+) True LOC111195231
XM_007230151.3 mRNA upstream 44618 13735246 ~ 13785212 (+) True slc24a2
XM_007230153.3 mRNA upstream 44618 13735246 ~ 13785212 (+) False slc24a2
XM_007230154.3 mRNA upstream 44618 13735246 ~ 13785212 (+) False slc24a2
XM_007230152.3 mRNA upstream 44618 13735246 ~ 13785212 (+) False slc24a2
XM_007230299.3 mRNA upstream 120187 13707689 ~ 13709643 (+) True LOC103042284
XM_007230165.3 mRNA downstream 933 13856969 ~ 13906069 (+) True LOC103029182
XM_007230161.3 mRNA downstream 933 13856969 ~ 13905969 (+) False LOC103029182
XM_007230162.3 mRNA downstream 933 13856969 ~ 13905969 (+) False LOC103029182
XM_007230163.3 mRNA downstream 933 13856969 ~ 13905969 (+) False LOC103029182
XM_007230164.3 mRNA downstream 933 13856969 ~ 13905969 (+) False LOC103029182
XR_002651543.1 other upstream 140115 13660147 ~ 13689715 (+) False LOC103025917
TU249593 other upstream 284335 13535071 ~ 13545495 (+) False LOC111195141
TU249329 other upstream 2137894 11690901 ~ 11691936 (+) True G183996
XR_002651530.1 other upstream 2373457 11431984 ~ 11456373 (+) False clhc1
TU249184 other upstream 2397904 11429171 ~ 11431926 (+) True G183892
TU249755 other downstream 199281 14055317 ~ 14058747 (+) False c21h11orf68
TU250099 other downstream 1403340 15259376 ~ 15261534 (+) True G184594
TU250296 other downstream 2597304 16453340 ~ 16486424 (+) False G184727
TU250295 other downstream 2624572 16480608 ~ 16486424 (+) True G184727
TU250318 other downstream 2697973 16554009 ~ 16554312 (+) True G184741

Expression Profile