RNA id: XM_007232787.3


Basic Information

Item Value
RNA id XM_007232787.3
length 3928
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC103037959
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 3536363 ~ 3550525 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGACTTCCTTTCCGGGCGGAAGGATCACCGGTAGTGCCGCAGCTCCTATGGAACATGGCGCTACACGAGGGAACCGAGACCCAGCTGGACCTGCTGATCCGGGCAGTGGAGGCGTCGGTGCACGGCGGCTACAGCTTGAGCTGTTCCGATAAAACCATCGAGGCGGCCGAAGCTCTGCTGCACATGGACTCGCCGTCCAGCTTACGAGGAGGCCGCAGCCCAGaggtGTTTGTGCCTCCATGTGTGTCAACTCCGGAATTTCTGCACGCTGCAATGCGACCTGACGTCGTCACAGAGACGGTGGTGGAGGTCAGTACGGAGGAGGCGGAGCCTATGGAGGTGGTGACCCTCATAGAGGAGCCACAGGTGCTggagagcagcaggaggaggaaagCTGGGAGAAAGCCGAAGCCCCACCCCATTTCAAACGGATCCCCCGATTTGGGCATAAAGAAAAAATCCAGAGAGGGCAAAGGAAGTACATACCTGTGGGAGTTTCTGCTGGACCTGCTGCAGGATAAGAACACCTGTCCCAGGTATATAAAGTGGACTCAGAGAGAAAAGGGCATCTTCAAGCTGGTGGACTCcaaagctgtgtccaaactgtGGGGAAAACACAAGAACAAACCCGACATGAACTACGAGACCATGGGCCGTGCCCTCAGgtattATTATCAGAGAGGGATTCTGTCGAAAGTCGAGGGGCAGCGCTTGGTGTATCAGTTTAAGGAGATGCCCAAGGACATTGTGGTAATcgatgatgaggaggaggatgatgaagatAAGTTTGACTCCAGCTGTGAGGATCTGCCCAGCGAGGTGTCGTGTGAGCGAGTGCTGACCACCGACTTTGCCAAGACCCACAGCATCCTGAGGGGGACGGGCTCGGCCGTGCTGCACACCCCCTCCCAAAGAAGCAACGTCTCGCTCGCAGCCACGCCCCTCCAGCGCATAGTGACGGTCTCTACGGCTACGGACGCAACGCAGCCATCCCATGCCACCATTATTTCTAACAACAGTGCacccagGACAGTCCGCGTTGCTATGCAGGTGCCAGTTGTCATGACGACCTCCTTGGGCCAAAAGATCTCCACGGTCGCTGTTCCGTCTGCTAACCCCCAACTCCTCACCGCGGCGACAGTGCCAACTAGTGTCACCACGGTGACTGGAGGCTCTGCCCCGCCCCAGAAGGTCCTGATCCAGACGGTTCCGGCAATGGAGAACGGAGAGAAGATCACAGTGCAGCTCGCCAAGATAATCACCATCCCCACAGCGCAGCTCACGCACTGCCAGCTGCAGCCCAAAGGGGGCGCTGCAGCTCCCGCCGGCTTCAGCCTGCTGGGGGCACCCCTGGCACTGCGCTCCATCACACCCACCGCACAGGTGGTCAGGCTAGCAGTGCCTGCCCAGGCGAGTCCAGCCCAGACGAGCCCCGTTCCCCGGCTTCAGAATGCAACCAATCCCGGCCTCGTCTCAGCCAGAAGCCCCACCCACACACCTCAAAACCTGCCCAGTCTCAGTCAGGTCCCAGTCAGAAACCCTAATCCCAACCCGTCCCAGAGCCCAATCCACACAGCCAATCCTGTCCTTCCTCGAAGCCCTGCCCCCACAGTTCAAATCGCTGCCAATCGGAATCCAGTTTCTGCTCACACTAGTCACACCCCTTCTTCAGCTACGGTACAGATCCAGGTCCAGCGTGTAGGAGAGTCAAAAGTGGATAGGGTGCCTCCTGCTGGACATACAGCAGCTCAAACCCAGCCAGAATCGACACCGCTGAGCTAGAGGTGGTGGactgtgaaaacacacacacacacacacacacacacacacacacacacagacacacactgctacacaaGCTGCGTTCCAAATGATGTAGGCTGTAGTCAAGGTAGGGTGGGTCCTTAGTGGGATTGTCTTGTGGCCAGACAATTGAAACAGTCTGGTGACGTGCAAGTGTGCATTTTTCATTTCCTCACAGAAAtcattttgaattttttttaagacaaacTCTGTAGCAGAGTCTTCATTTCTTGCCATTCTGGCTCCAGTTTTTGGATTGTTGATGGGTAAACGATGGccaggaaggatacatcagttgcgtccttCAAATCGCGCCAAACGCTTTCATTGGTACAGCGGCCAAGCAATGCAGCCTACCTAGTCTACAGCCTACACTTAAGCCCAATCTCATTTCAGTCCTTAGCCCAAACACTTAGCCCTATCCCGCTGTTTTGCACGTTCACGCCTAGGGGGAGGGGCTATAAGAAATGACTGGCAATGTGGAGACACAAGCCATCTTTTCctctacaaaaaaatataagctATATTGCTATAGTTTAATGCTAAGTTTTTCTTCATAACGAGAATAAAAAATCACTAGTAGTATGCCTAGCAGCATTtctcgttccaccttaaatgggaCAACAGACAGCAAtggctgcatcatttaaggtgatATGGGAAATGTAGCTATCTTGCCAACTAGCCACAATAAATGTTTTGCCAGGCAGCAGACGCTTTGGAAAATTTTAAATTATCTATCTTACCTTAAATCCAGCAGCTAGGTTGTCGCCCACAATCGTCCAATTATTTGGGCCTTGTCCCAATTCATAGGGAATTAGTTTCTCTTGTAACTTtattgctaaataaaacaaGGGTACGACAAGGGAAGGGGTACAAattagaaatgggattgggcctaacaCTTAGGAACGCAGCTCTTATCAGCGACCAGCGAATTAGTGCAGCCTCAGTGCTCCCCCTGGTGTTTGGCTGGTGTACGCAGAGTTTGTACAGTGGTCAGGATTGATCAGAGGGGTTTTAAGAATTCAGGAGGGGTCTTGCGATTAATTGAGTAAAAGGGACCAAAACAGCCTATACACTACAGTCCTAAAACACTACAGACACTACAGTAAATCTGAGAAGCACTACAGACTGCGACTGACCTGTACAGAAGAAAGACTCGAACCAAATGCGAACTGTTTCAGCCTGTAAATACGTCGTTTTGATATCCTGGAAagagaattttttttctctttattattattattaatactttttttttttttttgcatttttgatgCAAAAACCAGCAGCTCCGCCAGAACGGCCACTGTGAACGCAGTGTGGCCGAGAGCGACGGCAACACAGAGAATAGAAAAGGGAGAAAAAGGGAGGAATTGGAGggagttttattattttattttttttttaaaactctctctctctatttttctctctggaCCCGGCAGAAGAAAGCAGAAACGCTGTACATATTGACTCCGCGAATGAGCGACTCTGACATCACAGCCTTAGAACTCTTCTTTATCAGactttttatttacctttatttacGTATTCCagttttactacatttaaagcgacagttctgaaaaaaaaaaaaactccatcagTTAGACAATCAGGATTAAATCACATATGATTTAGTATTTCGGTTCTGGTATTTGGATCCAGAGTGAAGaaaagaattttaaaaaatatgtacgTGGATTTTAGCTGAACTGTCGCTTTAAGCTCGAGTATTATTAGCACATTGTACGTAGCGCAGTATTGCTGGCTAACGGGCAGCTCATCGTTTGTACATCCGTAGCCGTAGGGAGTGTGTGGAGTCTGTCCGGATCATTCAGATTAATCGGATCATCCGGATCACCGGTCAATGCCACACGCTCTGTTATGGTTCTCACCCCCACAGTAggaaaggtcaaaaggtcacaCCGTCTGTCCCCTTCACTTCTCTCCTCTCGGCACCGGTCTGGAGGAAGAGCGAGGCATCCGTGTTCAGAATGAACtagtttgtattattattcAACATTTGAAGTATATTCTATTTTGTTGTACTCTTGTTTCAAAGTGTATTCAAGTAGATtttactgaattattaaaaaaaaaaaagaatttccaCA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247074 lncRNA upstream 13870 3526280 ~ 3526973 (+) True G182492
TU246967 lncRNA upstream 42149 3492479 ~ 3498694 (+) True LOC111195151
XR_002651491.1 lncRNA upstream 42297 3492464 ~ 3498546 (+) False LOC111195151
TU246964 lncRNA upstream 60427 3478291 ~ 3480416 (+) True G182396
TU246938 lncRNA upstream 201027 3337528 ~ 3339816 (+) True G182374
TU247094 lncRNA downstream 109704 3660229 ~ 3660492 (+) True G182507
TU247096 lncRNA downstream 115336 3665861 ~ 3666103 (+) True G182509
TU247097 lncRNA downstream 115694 3666219 ~ 3666497 (+) True G182510
TU247098 lncRNA downstream 164084 3714609 ~ 3714820 (+) True G182511
TU247122 lncRNA downstream 359378 3909903 ~ 3917616 (+) True G182530
XM_022681679.1 mRNA upstream 5791 3524196 ~ 3535052 (+) True LOC103037633
XM_015601168.2 mRNA upstream 103799 3399191 ~ 3437044 (+) True LOC103038692
XM_022681680.1 mRNA downstream 264878 3815403 ~ 3827765 (+) True pcdh18
XM_022682131.1 mRNA downstream 845290 4395815 ~ 4423038 (+) True sclt1
XM_022681687.1 mRNA downstream 924208 4474733 ~ 4479749 (+) True LOC103036009
XM_007238222.3 mRNA downstream 947512 4498037 ~ 4506712 (+) True LOC103036626
XM_022681691.1 mRNA downstream 1385058 4935583 ~ 4941130 (+) False LOC103029349
TU246914 other upstream 250585 3287938 ~ 3290258 (+) True G182361
TU246909 other upstream 281993 3256367 ~ 3258850 (+) True G182356
TU246773 other upstream 971549 2525769 ~ 2569294 (+) True LOC111195173
TU246772 other upstream 1080521 2458294 ~ 2460322 (+) False LOC103029952
TU246236 other upstream 3148713 391614 ~ 392130 (+) True G181818
TU247191 other downstream 873388 4423913 ~ 4431946 (+) True G182577
TU247365 other downstream 1385083 4935608 ~ 4941130 (+) False LOC103029349
trnai-aau_13 other downstream 1625311 5175836 ~ 5175908 (+) True trnai-aau_13
trnai-aau_14 other downstream 1655561 5206086 ~ 5206159 (+) True trnai-aau_14
TU247511 other downstream 1876342 5426867 ~ 5427255 (+) True G182790

Expression Profile