RNA id: XM_007239677.2


Basic Information

Item Value
RNA id XM_007239677.2
length 1643
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC103029042
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4942421 ~ 4948100 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAGTCTCGCGATAAGCGGCGGGATCTGAGGCGGATGTTGATGTTGTTGTGGCTGGGCtcgcggcggcggcggcggtgaTAATAATAAGAGCGATACCGGAGGAGTTTTAGGCTGATTTTAGTTAATAAAGCGGCGGGAGGAGGCGGTGAGCGGGCTCTGGAGCTCCCCCGGCCCCCGATCTCCGCTCCCCCGGGGCCGAGGCGGCGATGATGGAGGACTTTGATGAGATCTacgaggaggaggaagaagaagaggaggaagaggaggaggacgagcAGCGGGCCGCGGAGGAGCAGCTTCTCAAATACGCCCCGGAGCCGGTCCTGGTCCGGGGATCGGGCCGGGTCACCGTGTTTGGACTCAGCAATAAATTTGAGTCAGAATTTCCTTCAGCACTTACGGGAAAGGTAGCACCTGAGGAGTTCAAAGCCAGCATAAACCGAGTGAACGGCTGCCTGCGGAAGACGTTGCCGGTGAACGTGCGGTGGTTGCTGTGCGGCTGTCTATGCTGCTGCTGTACCCTGGGCTTCAGCCTGTGGCCGGTTATCTGCCTCAGCAAACGGACACGAAGATCCATAGAGAAGTTACTGGAGTGGGAGAACAGTCGGCTCTATcacaagCTGTGTTTGCATTGGAGGCTGAGCAAAAGGAAGTGTGAAACCAACAACATGATGGAATATgtaattCTAATAGAGTTTCTACCCAAGATCCCCATCTTCAGACCGGATTAGCAGCTGTAACCGCTGTACTCTGCCTTATGGTGCCTTTCTCTGGTACTGTTGTGATCCCCCATGTGCCCCCTGCCCCCCCAGAACCTTGGACTACAAACTCTCGtccttatatatattatatatgctaCTTATCACAATCAGTGCTCTGTACTGTACCGAGCATTGTttacaactcacacacacttatacacacacttacacaacacATGGATGCGTGTGTgtcacacacatttacaaatgGATAAACTGTAACCCTGGCCTACAGGAAGCTGTAAGGTggacgcgcacacacacacacacttgtgcacacatattatatattttaaccccttaaccaATCAAAACGGGAAAAAAACTTCCTCTTACCCTTCAAGTTTAGACCTGCACCTTCATCCACACCGGTGAAACAGCCACGCGCTACAGTTGACGTCCTGTTTGAGCTACTGAGGAGCCAATCAAGCGGAGTTATTCCACAGCACAAGGCGCTGCTCGTcgtttctttactttttaaccCAAATGTAGCCCCGTCTGGTATGTCAAGTTTGCTTCTTAGGTGTTTCACTAAGGCAATGAGGctgatttagctttttttttatattaattttagaaTTCCTGTATAAATTAGGGTTTTGGTGTGAAAATGTGCTTCATTGTTCTGCCAATTCGATAAACATCATGATATATTGTGTTCCTGAAAGCAAGACGAttatattgtgattgtttaaaCGATTAGATTTTAGAAACAAATATAtgctatatttataaaatctgagtaaatcTAAGTTTACACAGTACCTCCCTCTAGTGGTCAgggtttaaaaacaacacaaaatgaacccaTGTCTGATGCCACTCTTAATCTACATGTAAaccatttaataattaattaattaaaaatcgaTACTGTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247348 lncRNA upstream 53078 4885736 ~ 4889343 (+) True G182690
TU247323 lncRNA upstream 90360 4851503 ~ 4852061 (+) True G182674
TU247322 lncRNA upstream 90978 4850587 ~ 4851443 (+) True G182673
TU247245 lncRNA upstream 427562 4514287 ~ 4514859 (+) True G182607
TU247244 lncRNA upstream 428206 4513753 ~ 4514215 (+) True G182606
TU247370 lncRNA downstream 18911 4967011 ~ 4969678 (+) True G182703
TU247421 lncRNA downstream 88110 5036210 ~ 5037608 (+) True G182730
TU247453 lncRNA downstream 334248 5282348 ~ 5339331 (+) True G182752
TU247512 lncRNA downstream 479249 5427349 ~ 5427850 (+) True G182791
TU247694 lncRNA downstream 545742 5493842 ~ 5498366 (+) True G182907
XM_022681690.1 mRNA upstream 1287 4935584 ~ 4941134 (+) True LOC103029349
XM_022681691.1 mRNA upstream 1291 4935583 ~ 4941130 (+) False LOC103029349
XM_007238222.3 mRNA upstream 435709 4498037 ~ 4506712 (+) True LOC103036626
XM_022681687.1 mRNA upstream 462672 4474733 ~ 4479749 (+) True LOC103036009
XM_022682131.1 mRNA upstream 519383 4395815 ~ 4423038 (+) True sclt1
XM_022681696.1 mRNA downstream 23004 4971104 ~ 4981396 (+) True LOC103030219
XM_015603191.2 mRNA downstream 47677 4995777 ~ 5031681 (+) True LOC103028516
XM_022681700.1 mRNA downstream 47677 4995777 ~ 5031681 (+) False LOC103028516
XM_022681701.1 mRNA downstream 132298 5080398 ~ 5105339 (+) True LOC103028729
XM_022681703.1 mRNA downstream 168417 5116517 ~ 5140276 (+) True mttp
TU247365 other upstream 1291 4935608 ~ 4941130 (+) False LOC103029349
TU247191 other upstream 510475 4423913 ~ 4431946 (+) True G182577
TU246914 other upstream 1652163 3287938 ~ 3290258 (+) True G182361
TU246909 other upstream 1683571 3256367 ~ 3258850 (+) True G182356
TU246773 other upstream 2373127 2525769 ~ 2569294 (+) True LOC111195173
trnai-aau_13 other downstream 227736 5175836 ~ 5175908 (+) True trnai-aau_13
trnai-aau_14 other downstream 257986 5206086 ~ 5206159 (+) True trnai-aau_14
TU247511 other downstream 478767 5426867 ~ 5427255 (+) True G182790
trnap-agg_6 other downstream 897331 5845431 ~ 5845502 (+) True trnap-agg_6
TU247815 other downstream 1094588 6042688 ~ 6048474 (+) True G183001

Expression Profile