RNA id: XM_007243335.3


Basic Information

Item Value
RNA id XM_007243335.3
length 2889
RNA type mRNA
GC content 0.50
exon number 4
gene id tlr3
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 3148161 ~ 3157508 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTCTCCGGCCTGAAGTTACATCAACTGCAGCGCGACTCCGCTGCGGGTGACGTCACTGGAGCACCGCGGGCTCCGCGAGAGGCTGGAGGCGCGTTTTCGCGGATTTTGAGGCGTTTTTGCTCTAAATTAACAACAGCTTTTGTCGGGAATTTGCAGAATTTCTCTCAGGGACTCGAGTGAGAGCGTTAAAATCCGATTTTCAACCTTTCATTTCATGTTTGCTCAGGTTTGTCTGCAGCGCGCGCAGCTGAACTTCACCTCAGCTCACCTCAACCGTCTGATTTCAGTGTACAAATAAGGAAATAAGGAAAATTGTAACACCGTAGACTATTAGGAGTTACAGGAGAAAATTTCTCAACAACATTGACATTGACTTTGGCCCTTTGGCAACATTGCACCATGGCCCCGCCAAGCTCTTGCATCCTTCTGCTcctttgtcttggaatgctctGTCCACATCCAGGTGACTCCTTTCCCCACAAAACCACATGCACCATCAAGGAAGGCAAGGCGGACTGCAGCCACATGAATCTAAACAATGTACCCCCGGGTCTGCCCCCTGACATCAGCACCCTGGACATGTCCCATAACCGGCTTAAGGTTCTGGACCCCGGGGCCCTGAGCCGCTACCCGAGCCTGGAGCACCTAGACGTCAGTTACAACTCCATCATGGGGCTGGGGCCGGGGCTGTGTGATGCCCTGCCACGCCTGCAACACCTCAGCGTCCAGCGCAACCAGGTTCTCCACCTGACTGCAACCGAGCTGAGGAACTGCTCACGCCTGACCCACCTCGACCTTTCTGACAACAGGCTCAAGCTTATCGGCGAGCCCTTCTCCGTTTTAAAGAGTTTGACGTGGTTAGACGTGTCTCGCAACAAGCTGATCACTGCTGGCCTGGGCACCAAACCTCAGCTGCCCAGCCTGGTGACCCTCATCCTCTCCGGGAATGACTTCACAACTCTTAAGACGGATGATTTCTCTTTCCTTAGCAGCTCCCCTTCGTTCCGTGTGCTGGGACTTTCCTCCCTGCCTCTAAAAAAAGTGGAACATGGCTGCTTCAAACCCGTTTCTGCACTCACAGACCTGGTGTTGGATGGTTGCAACCTCAACACTCTCCTCACCAAAGTCTGTGATGAGTTGTCGGACACTTCTGTAAGAAATCTCACCCTCCGCAGCACTCTGCAAACCGTGCTCAAGAACATCACCTTCAAAGGCCTGCTCAAGACTAACCTCACCATGCTGGACCTCTCCAGCAACAAAATATCTAAAATCGATGACGGCACTTTCCAGTGGCTTCCCTTGCTGGAGTCCCTCTCTTTAGAGaacaacaatattaaacacCTGACCAAAGATACCTTTATGGGTCTAAAAAGTGTAACGCAACTCAACTTGCAAAAGGCACTGGTTAAAACCAAGGCCGCCTATCCGATAATAGATGACTTCTCCTTTCAGCCATTGGTCAAGCTAGAGCATCTGTTTATGAGGGACACTTCCTTTAGGGACATTACTGAGAATATGTTTGCTGGACTACCATCTCTTAGGACACTAGACCTGAGTTGGAGCAAAGCAGGGCTTAAGACTATCAGCAATACCACATTCGCCTCCTTGCAAGGGTCTCCACTCCAGGTGCTCAATCTTACAAGAATGGCCCTCACGAAACTTGACCCCGGCGCTTTCTCATGCCTGGGAAACCTCACCACTCTTGTGCTCAAGTACAACTTCATCTCCCAGGATCTAACAGGAGAAGAGTTCCGCGGGCTCAACAGTATAAGGGAAATCTATTTGTCTCTCAACCAGCAGAAGATCAGCCTAACCCACAGATCCTTCATCCATGTGCCCACACTGAGGGTTCTAATGTTGGGTCGTGCCTTGACTGGCACTCTAGACATGGAACCCTCTCCCTTCAGACCACTAACCAACCTCACAGTGCTGGATCTCAGCAATAATAACATTGCAAACTTCAACAGTGGCTTGCTGGAGGGACTGTATCATCTCAAGGTGCTGAAAATGCAGCACAACAACTTGGCTAGGTTGTGGAAGGATGCTAACCCAGGGGGTCCTGTTCTGTTCTTGAAGGACACTCAGAACCTCTCTGTTCTGGAGTTGGATTATAACGGTTTAGATGAGATTCCACTCAAAGCCTTGCGAGGCCTTTTCCATTTAAATGAGCTCAGCCTCAGTGGGAATCTGTTGAACTACATGCATGGGTCCATATTTAATGACTTGCAGGCGCTGCGCTACTTGCGAATGGAGAAGAACCTTCTGACGTCAGTGCTGATGGGGACGTTCAGCGTCCCGCTGTCCAACTTGTCTGAGCTTCACATGGAACACAACCCCTTTGACTGCACCTGTGAAAGCATCCAGTGGTTTTCTGACTGGCTCAATTCCACCAACACCAGCGTCCCTGAGCGCACCAGCAGCTACATCTGCAACACCCCAGCAGCGTACTTTAACCGCTCTGTGCTAGACTTTCAGACAAACTCCTGTAAGGACTTGCTTCTCTTCCAGGGTCTCTATACTTTCAGTAGCACCATGGTGCTTGGTCTAATGGCTATAGCCTTTCTGGTGCACTTCCAGGGATGGAGGATTCAGTTCTTCTGGAACATTGCAGTTAATCGTACCCTTGGTATGAAAGGCTCCAGATATGAACAAATGGTTGAGGACAGATACGACCACGATGCCTATGTTATCCACGCACCTGACGATAAACCTTGGGTGGAGCGAAGCTTGCTCCCActggaaaatgaaaattttagttttttcctgGAGGATCGAGATGCAGTGCCAGGCCAGTCCACTTTGGAGTCTATTGTTGAGAACATAAGAAGGTCCAGGAAAATCATTTTCGTCGTCACAGAGGCTCTTCTGAACGATCCCTGGTGCAGAAG

Function

GO: NA

KEGG:

id description
K05401 TLR3, CD283; toll-like receptor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246973 lncRNA downstream 112654 3025175 ~ 3035507 (-) True G182404
TU246869 lncRNA downstream 349003 2791274 ~ 2799158 (-) True G182329
TU246814 lncRNA downstream 569431 2578470 ~ 2578730 (-) True G182281
TU246801 lncRNA downstream 637042 2490408 ~ 2511119 (-) True G182273
TU246766 lncRNA downstream 1025583 2113574 ~ 2122578 (-) True G182244
XR_002651508.1 lncRNA upstream 11229 3168736 ~ 3190142 (-) True LOC111195174
TU246996 lncRNA upstream 73381 3230888 ~ 3268887 (-) True G182423
TU246995 lncRNA upstream 107635 3265142 ~ 3294956 (-) False G182423
XR_453051.2 lncRNA upstream 111479 3268986 ~ 3282130 (-) False LOC103042415
XR_001518279.2 lncRNA upstream 111479 3268986 ~ 3282130 (-) True LOC103042415
XM_022682129.1 mRNA downstream 486935 2566363 ~ 2661226 (-) True LOC103028260
XM_022681657.1 mRNA downstream 1438237 1585495 ~ 1709924 (-) False LOC103021730
XM_007232798.3 mRNA upstream 143913 3301420 ~ 3306306 (-) True ankrd37
XM_007232796.3 mRNA upstream 180324 3337831 ~ 3341350 (-) True LOC103040979
XM_007232801.3 mRNA upstream 228058 3385565 ~ 3389256 (-) True helt
XM_022681683.1 mRNA upstream 947314 4104821 ~ 4155603 (-) True pcdh10
XM_022681684.1 mRNA upstream 947314 4104821 ~ 4155602 (-) False pcdh10
XR_002651506.1 other downstream 1438237 1587252 ~ 1709924 (-) False LOC103021730
trnai-aau_12 other downstream 1620062 1528026 ~ 1528099 (-) True trnai-aau_12
TU246326 other downstream 2640147 494190 ~ 508014 (-) True cisd2
TU246325 other downstream 2640147 501353 ~ 508014 (-) False cisd2
TU246258 other downstream 3099946 45841 ~ 48215 (-) False LOC103026712
XR_002651509.1 other upstream 285059 3442566 ~ 3454586 (-) True LOC103039001
TU247085 other upstream 390126 3547633 ~ 3550413 (-) True G182501
TU247548 other upstream 2023016 5180523 ~ 5213151 (-) False G182810
TU247634 other upstream 2128481 5285988 ~ 5295716 (-) False LOC111195184
TU247875 other upstream 2953863 6111370 ~ 6113092 (-) True G183043

Expression Profile