RNA id: XM_015604221.2


Basic Information

Item Value
RNA id XM_015604221.2
length 1136
RNA type mRNA
GC content 0.55
exon number 7
gene id LOC103032759
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 325636 ~ 329837 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAGTTCTTGACTATATATATTGCATCTGTGTGGAGCAATCAGGTACTCTGCTCCTCCAAGAGACTCTACACAGACGCATCACTGTATAACTGCAGAAGACGGTCAAGATGAAAGCTGTGGCAATCTTCTTGTGTTTTGTGGCCTACACATTCGCTGCCCCAGCGCCCGACAGCGGCAGCCAGGAGCAGCAGATAGCTGCCCATGCTAACACAGCCCTGCATCTGATGGAACTCTACAGGATGTATGGCCACCTGCAGCAACAGGGTGTCGCAGctcctgctccagctccagttcAGCCCTTCCTGTTTAACTACCCAACCCTGCCCAGAGGAGGAGATAACTCTGATGAGGAAGCACAGCCTAATTACGCTGCATTTTACCCTCCCCACGGCTTCCCAGCTGTACCAGCAGCACCGGCGGCACCAGCAGCCCCACTGAACTCCGATGAAGCCGAGGGAGCAGAAGAGGCCGAGGCCGTAGAATCAGAACCAGCAGCTGAAGCCGAACCGGCAGCCGAAGCCGAACCTGCAGCTGAAGCGGTCCCAGCAGCCGAAGCGGTCCCAGCAGTCGACCCTGCAGTCGACTTAGCAGTCGACCCATTAGTCCCTGTTGCCACTCCCATCGACCCCGCTGTCATTGACCCCCATGTGGCTGTTGAAGTAGGCATTGAGGTTCCTGCCTCCGCAAACATCCCTGCCGCCGATGTCCTCGCAGCTGCCACTGCCATAGCTGCCGACCCGGCCCTTGTCCCCCAGGGGGCGCCGGTGGCTATTGAGATCGACACCACAGTGGTGGGGCCAGAGGTTGGCGCTCCAATCGTTGCGGACTCTCCTGTCCAACCGTTTTAATCACCACCGCCCCATCCCACCCCGCCCACCCCAACAACTATCTATAAGATTAATCAGCCACATCACTACTGTAGAGGATTcacagttagcagcatagcTCAGGAGGTGGGCGGGGTTACAGTTTACATCCAGTCTATGTGCGCGAAAGGTTGATTTGTGTGAACCTCAGTGTGAAAATTGAAGCTCTGGGAGTGTGAGGAAACCTCATGTATGATTCAGtcttttctctgtatttttgtcTACGCTTGTTTTTCTTCAAATTAAACATGTCTGTCTTCATCCTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246223 lncRNA upstream 19324 300118 ~ 306312 (+) True LOC111195150
TU246216 lncRNA upstream 33385 289010 ~ 292251 (+) True LOC111195149
TU246215 lncRNA upstream 42832 282369 ~ 282804 (+) True G181802
TU246213 lncRNA upstream 45846 279565 ~ 279790 (+) True G181800
TU246210 lncRNA upstream 51803 271554 ~ 273833 (+) True G181798
TU246229 lncRNA downstream 2743 332580 ~ 333245 (+) True G181811
TU246234 lncRNA downstream 102702 432539 ~ 433567 (+) True G181816
TU246238 lncRNA downstream 115244 445081 ~ 445298 (+) True G181820
TU246239 lncRNA downstream 162761 492598 ~ 500981 (+) True G181821
TU246362 lncRNA downstream 300070 629907 ~ 663519 (+) True G181927
XM_022681624.1 mRNA upstream 10513 307677 ~ 315123 (+) True LOC103032143
XM_022681574.1 mRNA upstream 19540 300095 ~ 306096 (+) False LOC111195150
XM_022681573.1 mRNA upstream 34094 289336 ~ 291542 (+) False LOC111195149
XM_022681623.1 mRNA upstream 60856 258891 ~ 264780 (+) False LOC111195169
XM_022681622.1 mRNA upstream 60856 258893 ~ 264780 (+) True LOC111195169
XM_022681628.1 mRNA downstream 2293 332130 ~ 341442 (+) True LOC103042564
XM_022681629.1 mRNA downstream 48391 378228 ~ 426514 (+) True tacr3
XM_007235683.3 mRNA downstream 133486 463323 ~ 475354 (+) True bdh2
XM_022681630.1 mRNA downstream 145834 475671 ~ 495422 (+) True LOC103047018
XM_022681631.1 mRNA downstream 179814 509651 ~ 540134 (+) True suclg1
TU246214 other upstream 39355 282076 ~ 286281 (+) True G181801
TU246212 other upstream 47463 276671 ~ 278173 (+) True G181799
TU246178 other upstream 125640 191957 ~ 199996 (+) True G181779
TU246236 other downstream 61777 391614 ~ 392130 (+) True G181818
TU246772 other downstream 2128457 2458294 ~ 2460322 (+) False LOC103029952
TU246773 other downstream 2195932 2525769 ~ 2569294 (+) True LOC111195173
TU246909 other downstream 2926530 3256367 ~ 3258850 (+) True G182356
TU246914 other downstream 2958101 3287938 ~ 3290258 (+) True G182361

Expression Profile