RNA id: XM_022681587.1


Basic Information

Item Value
RNA id XM_022681587.1
length 1823
RNA type mRNA
GC content 0.56
exon number 13
gene id LOC103026105
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 12979 ~ 23966 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCACAGTTAGACTGTCCCGGAGAGCTTAGTGCGGCACAGTGAGGGTACAGAGGGAGCAGCAGGGATGTCGGGCTGCAGGATCTGGAACCGGGAGCACGAGCTGCCAGTCTATCTGGCCAATCCCGTCACTCGCTTCCAGCACCAAGCCACCCGGGAGAGGGCACAGGAATGCCCCATCACTGACCTGCAGAGCAGCTGCGCCAGCTCAGCCAGCAAAGCCGGCAGCACCCAATTCGAGCAGAGCTTAGAGGAGCAGGACAGCACCAACCAGCAGCACGGTGGCGGCGGGATGTCAGACACAGGAATCCAGAACAGCCAAAACCTTCTACACCACATgggtgagCAGTTGCTGATTAAAGGGGGGCGAGTGGTTAATGATGATCAGTCGTTTTATGCTGATGTTTATGTGGAGGATGGAGTCATCAGGCAGGTGGGGGAAAACCTCATTGTGCCCGGTGGGGTGAGGGTGGTGGAGGCGGATGGTCGCATGGTGATTCCTGGAGGAATCGACACCAACACCTGCCTGCACAAAGACTACCTGGGCAGTCTGCCGGTGGACGACTTTTTCCAGGGGACCAAAGCAGCACTGGCTGGAGGAACCACCATGATCATTGATCATGTGACCCCTCAGCCCGGAGCCAGTCTGCTGCATGCGTTTGAGCAGTGGCAGGCAGCAGCGGACAGGAAGTGCTGCTGTGATTACTCGCTGCATGTGGACATCCCGCAGTGGGACGGGGGCGTGAAGGACGAGCTGGAGGTGCTGGTGCAGGAGAAAGgaATAAACTCATTCCAGGTTTACATGGCCTACAAAGATTTGTTCCAAATGACAAACAGTCAGttgtatGAGGCTTTATCATGTTTGAGAGATTTAGGCGCAGTTGTGTTGGTTCATGCGGAGAACGGAGATCTAGTAGCACAGgaACAGAAGAAGATCTTGTCAATGGGCATCACTGGGCCAGAGGGTCACCCCCTCAGCCATCCAGAAGAGCTTGAGGCGGAGGCTGTGTTTCGCGCTATCACGATCGGCAACCAGGTCAACTGCCCCATCTACATCACCCGTGTGATGAGTAAAACTGCAGCGGACACTCTGGCCCAGGCCCGCAGGAAAGGCTGTGTGGTGTTTGGAGAGCCTCTAACGGCAAGTCTGGCCACAGATGGTTCGCACTACTGGAGCAGGAACTGGGCCAAGGCAGCAGCCTATGTCATCTCCCCACCACTCAGCCCGGACCCCACCACCCCCCAGCACCTACACACCATGCTCACGTGTGGGGACCTGCAGGTGGTGGGCAGTGGTCACTGTGCTTACAGCACGGCCCAGAAGGCCATTGGGAAAGATAACTTCACCCTGATCCCTGAAGGAACCAATGGAGTGGAGGAGCGAATGGGCTTCGTCTGGGACAGAGCAgtggcTCTTGGGAAAATGGATGAGAACCAGTTTGTTGCTGTGACGAGCACCAACGCTGCCAAACTCTTCAACCTGTACCCCCGTAAGGGACGCATCGCCGTAGGGTCAGACGCTGACATCGTCATTTGGGATCCGGACCACGTTAAAACCATTACAGCCAAACTCCAGCAATCTgcTCTGGAGTATAATATCTTTGAGGGGATGGAGTGTAGGGGTGTTCCTGTGTTTGTGATCAGTCAGGGACGGGTGGTGTACGAAGACGGAAAGCTGAATGTCCAGCAGGGAACTGGCCGCTTCATCCCACGGAAACCGTTTCCTGACCACGCCTACCAGCGCATCAACACCCGCAACAAGGTCACACTCCTACACCCACACCACTCATAAACttctatctggatgggattcgTTACTCAGGGG

Function

GO:

id name namespace
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246136 lncRNA downstream 3450 27415 ~ 28989 (+) True G181750
TU246143 lncRNA downstream 3450 27415 ~ 28989 (+) False G181750
TU246147 lncRNA downstream 3450 27415 ~ 28989 (+) False G181750
XR_002651501.1 lncRNA downstream 69200 93165 ~ 93769 (+) True LOC111195166
TU246176 lncRNA downstream 139664 163629 ~ 166044 (+) True G181777
XM_022681591.1 mRNA downstream 16101 40066 ~ 45653 (+) True LOC111195165
XM_022681614.1 mRNA downstream 41916 65881 ~ 107890 (+) False LOC103030568
XM_022681612.1 mRNA downstream 41916 65881 ~ 103458 (+) False LOC103030568
XM_022681611.1 mRNA downstream 41917 65882 ~ 107890 (+) True LOC103030568
XM_022681613.1 mRNA downstream 41917 65882 ~ 107890 (+) False LOC103030568
TU246178 other downstream 167992 191957 ~ 199996 (+) True G181779
TU246212 other downstream 252706 276671 ~ 278173 (+) True G181799
TU246214 other downstream 258111 282076 ~ 286281 (+) True G181801
TU246236 other downstream 367649 391614 ~ 392130 (+) True G181818
TU246772 other downstream 2434329 2458294 ~ 2460322 (+) False LOC103029952

Expression Profile