RNA id: XM_022681619.1



Basic Information


Item Value
RNA id XM_022681619.1
length 834
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC111195167
representative True

Chromosome Information


Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 245466 ~ 247320 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


tagcttcagattagatcatcactacacacctccaaactacaTGTAGCTTCCTTTCACTGGAAAAAGGAATAGATACGTAAATGAATTTTCACTTATTATAACTCAAATGTCTTTGTTTTTGCTCACAGCTCATCAGTTTGACCATCATGAAAAGGAAGGTGACTCTGTCTTGCTGAATCTGGTCATGCAGCCACCGGTGATGGTGCATTTCACCAGTGCGAGTAAGGACACTACAGAGGTTTGGATTTGCACCATCACGAAAAAAGGAGTTCACTGCAAGAGCGGCTACGATCACCGAGCCTCCATCGTGAATGCGTCTCTGATGCTGAGTCAGCTGACAGTGGCAGACAGAGGAACGTACACCGTCGTAGACATCAATACATCGGAAGTCTTTGCTTTTCACCAGCTAGAGGTTAttgATATGCCCTCTGCCAAGTTTCCAGTTGTTGCTTTAGTATCATGCGGGCTTCTTGTGGCAGTTGTCTGTGCATTTGCTCTGGGGGCCTGCTGTCGAAAGCGAAAGCAACAGCAGCAAAGGCAGCCCAGGCACGAGATGAGAGGCTCTGACGATGAGACGGTCCAGCTCTCAGTTCAGCAAAGTGAAAGCAGTTACAGACCACCAATTCCATGGATTGAGAAGAAAcaaaacaaccaaccaatctTAGAAGATCCAGAAGAGGAAGGCTCCTGTTCCACCCAGGCTACTGCTGATCAAGAGATACAAAATGAACAAAGCTAAAGCAGCAGCTTGGCTAATTGTTGTGCGAGTTTTtgtctaacttttttttgtgtaacgtgttttttgtgtgttaagtTTTAACttaagagagtgcg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU246186 lncRNA upstream 14405 211835 ~ 231061 (+) True G181782
TU246184 lncRNA upstream 14405 220076 ~ 231061 (+) False G181782
TU246174 lncRNA upstream 36943 207746 ~ 208523 (+) True G181775
TU246179 lncRNA upstream 50529 191957 ~ 194937 (+) False G181779
TU246176 lncRNA upstream 79422 163629 ~ 166044 (+) True G181777
TU246208 lncRNA downstream 21382 268702 ~ 269257 (+) True G181797
TU246210 lncRNA downstream 24234 271554 ~ 273833 (+) True G181798
TU246213 lncRNA downstream 32245 279565 ~ 279790 (+) True G181800
TU246215 lncRNA downstream 35049 282369 ~ 282804 (+) True G181802
TU246216 lncRNA downstream 41690 289010 ~ 292251 (+) True LOC111195149
XM_007229284.2 mRNA upstream 38452 202308 ~ 207014 (+) True LOC103027206
XM_022681614.1 mRNA upstream 137576 65881 ~ 107890 (+) False LOC103030568
XM_022681620.1 mRNA downstream 3156 250476 ~ 256183 (+) True LOC103031511
XM_022681623.1 mRNA downstream 11571 258891 ~ 264780 (+) False LOC111195169
XM_022681622.1 mRNA downstream 11573 258893 ~ 264780 (+) True LOC111195169
XM_022681573.1 mRNA downstream 42016 289336 ~ 291542 (+) False LOC111195149
XM_022681574.1 mRNA downstream 52775 300095 ~ 306096 (+) False LOC111195150
TU246178 other upstream 45470 191957 ~ 199996 (+) True G181779
TU246212 other downstream 29351 276671 ~ 278173 (+) True G181799
TU246214 other downstream 34756 282076 ~ 286281 (+) True G181801
TU246236 other downstream 144294 391614 ~ 392130 (+) True G181818
TU246772 other downstream 2210974 2458294 ~ 2460322 (+) False LOC103029952
TU246773 other downstream 2278449 2525769 ~ 2569294 (+) True LOC111195173

Expression Profile