RNA id: XM_022681620.1


Basic Information

Item Value
RNA id XM_022681620.1
length 1180
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC103031511
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 250476 ~ 256183 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTACGATGACCTCATGACTTCAGGTGGCTTTAAATCCCTGTTAAAAAGGAGCATAAACCTCAGTGTTTAGGACTAATATGAGTCGGGTTTAGGGTTTTACTCATCCGCTATTCCTGGGGAAAGGGATTCTGCACAGGAAAAAACAACAGTCCGGCAGACAAGGGTCCATTCATCCAGGCCACAACATTAATCAGACACAAACAAAGCGTGAACTAATACACCTGGATTAGCATGCACAAGTCATTAGCATGAGATAGCTCTGCAGGCCCAATAAAAGACCGCTGGAGAGCCCAGACCAGTACAGAAGATCTGAAACCTCCTGAGGATTCACACACTGAGAGACTACAACAAAATGAAGTGCATTGTTTTCATCGCCTTCCTGGCTTCAGCAGCCTATatgacCTCAGCAAAGAAACTGCTGGTGGTCGGCGGTTTGAACGGTGCTGGTCTGGTGACTGGTCTTAATGGTGGCTTGGTCACTGGTCTTAATGGTGGCTTGGTCACTGGTCTTAATGGTGGCTTGGTCACTGGCCTTAATCCTGGCTTGCTGGGCCAGGGGCTGGTGGTTGGAGGGCTGAACCCAGCGCTGATCCCTGCTGGTGGCGCTGTAATCGGACAGACCCCATTCGCTCAGATGCTGCCTGGTATGTCTCCATTCATGATCCAGAATCCAATGGCTGCTCCATTTGGGGCACCCAACCCTCAGGTGCCAATGCCTCCACAGCCTGCAATGGGCTTCCCACCCATGGGACTGCCATACCTTGCGCCCCAAAACCCTGCCCTGCGCCAGATGCTGCCTCCTCAGCAGCAAGCAGCGGGCGGTATGAACCCAATGGGAAACGGACAGCAGCCACAGGGAGACATGCCTGCTGGCCCAGTGCCACGATTCAGGCGAACACTGCTCAGGAGAATGCAGGCCAAATCAACTAACACCAACCCTGAggTCACACCAACCCCAACTGTATCGAGCACCCTGATGAACTGATGAGctttttttccagagaagcTGGAGGTGTTTCAggaaattcacactgttctcattttcatCAATGTGAAATCATGAAAATCAGGGAAGAAAATAATGTGACAAACACTGTGTTCCTTTTCTTGACTAGTTAGAAAAATCGTTATTGTACTTTAATGATTAGACTTTCAAATAAATCTTTGTGCATCAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246186 lncRNA upstream 19415 211835 ~ 231061 (+) True G181782
TU246184 lncRNA upstream 19415 220076 ~ 231061 (+) False G181782
TU246174 lncRNA upstream 41953 207746 ~ 208523 (+) True G181775
TU246179 lncRNA upstream 55539 191957 ~ 194937 (+) False G181779
TU246176 lncRNA upstream 84432 163629 ~ 166044 (+) True G181777
TU246208 lncRNA downstream 12519 268702 ~ 269257 (+) True G181797
TU246210 lncRNA downstream 15371 271554 ~ 273833 (+) True G181798
TU246213 lncRNA downstream 23382 279565 ~ 279790 (+) True G181800
TU246215 lncRNA downstream 26186 282369 ~ 282804 (+) True G181802
TU246216 lncRNA downstream 32827 289010 ~ 292251 (+) True LOC111195149
XM_022681619.1 mRNA upstream 3156 245466 ~ 247320 (+) True LOC111195167
XM_007229284.2 mRNA upstream 43462 202308 ~ 207014 (+) True LOC103027206
XM_022681611.1 mRNA upstream 142586 65882 ~ 107890 (+) True LOC103030568
XM_022681613.1 mRNA upstream 142586 65882 ~ 107890 (+) False LOC103030568
XM_022681615.1 mRNA upstream 142586 65882 ~ 107890 (+) False LOC103030568
XM_022681623.1 mRNA downstream 2708 258891 ~ 264780 (+) False LOC111195169
XM_022681622.1 mRNA downstream 2710 258893 ~ 264780 (+) True LOC111195169
XM_022681573.1 mRNA downstream 33153 289336 ~ 291542 (+) False LOC111195149
XM_022681574.1 mRNA downstream 43912 300095 ~ 306096 (+) False LOC111195150
XM_022681624.1 mRNA downstream 51494 307677 ~ 315123 (+) True LOC103032143
TU246178 other upstream 50480 191957 ~ 199996 (+) True G181779
TU246212 other downstream 20488 276671 ~ 278173 (+) True G181799
TU246214 other downstream 25893 282076 ~ 286281 (+) True G181801
TU246236 other downstream 135431 391614 ~ 392130 (+) True G181818
TU246772 other downstream 2202111 2458294 ~ 2460322 (+) False LOC103029952
TU246773 other downstream 2269586 2525769 ~ 2569294 (+) True LOC111195173

Expression Profile