RNA id: XM_022681622.1


Basic Information

Item Value
RNA id XM_022681622.1
length 836
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC111195169
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 258891 ~ 264780 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttagattcTTCAGCCACGAATAGGAATAATTGCAAGTAACAGCAATGAGatctTACGTCTCAATGGAATCACCCTGGCTGGTATGGGCATGGGCATGGGCATGGGCATGGGCATGGGCATGGGCATGGGAGTGGGCCAAGCACAGGGAACACCGTTATTTTCCCCTTTCCTGATACAACCACAAGCAGACGTCCTTCTGCCTCCACAGATATTGAACTTTGGTGCCCAGTTGCCCTTTTTACCACCCCAACAGAATCAACTGCCGCAAGTACTGATACCCCCCAATCCACAGGAGCAGCCCACCGCCCTGAACCCCAACAACCCTCAACTCAACCAGAACCCTGGCCAGATGGTTCCTCAGTTCTTCCCCTTCCCTCAAGGAACAGGAGGACAGCAGGGATTCCCATATTACCTGACTTATGGCTTCAATGGAGGGAACCCGCAGTTGGGATTTCCACCCAACCAGAAACTGGCCCCACAAATCCCAGTAAGGCCAACTCTGGCCCCCCGGCCACCTGTTCGGAACAATGGAAACATTCTGGAACCATGGCGTTTGACTCCACCCCCTGATAACCGTGGGGACCGCCCTGGCGTTGATgggGATCCTGCATTGTCCTTTTTTAAGCCATAGACATTAATAGTAAAAAGgcaACCTGTTCTCAAGAAAAAGCACTAAGAACTAAGAACTTACAAATAGCACAACTACTGAATTTTGAAAAGAATATTTTCCTGTAACCCATCAATACAACAAATATCTTATTAATTCAAATGCAATAATTAATTAGCATTGTCATGTTTGTATACCAGcggataataaatgcttttgtGTTGAGAA

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246186 lncRNA upstream 27832 211835 ~ 231061 (+) True G181782
TU246184 lncRNA upstream 27832 220076 ~ 231061 (+) False G181782
TU246174 lncRNA upstream 50370 207746 ~ 208523 (+) True G181775
TU246179 lncRNA upstream 63956 191957 ~ 194937 (+) False G181779
TU246176 lncRNA upstream 92849 163629 ~ 166044 (+) True G181777
TU246208 lncRNA downstream 3922 268702 ~ 269257 (+) True G181797
TU246210 lncRNA downstream 6774 271554 ~ 273833 (+) True G181798
TU246213 lncRNA downstream 14785 279565 ~ 279790 (+) True G181800
TU246215 lncRNA downstream 17589 282369 ~ 282804 (+) True G181802
TU246216 lncRNA downstream 24230 289010 ~ 292251 (+) True LOC111195149
XM_022681620.1 mRNA upstream 2710 250476 ~ 256183 (+) True LOC103031511
XM_022681619.1 mRNA upstream 11573 245466 ~ 247320 (+) True LOC111195167
XM_007229284.2 mRNA upstream 51879 202308 ~ 207014 (+) True LOC103027206
XM_022681613.1 mRNA upstream 151003 65882 ~ 107890 (+) False LOC103030568
XM_022681573.1 mRNA downstream 24556 289336 ~ 291542 (+) False LOC111195149
XM_022681574.1 mRNA downstream 35315 300095 ~ 306096 (+) False LOC111195150
XM_022681624.1 mRNA downstream 42897 307677 ~ 315123 (+) True LOC103032143
XM_015604221.2 mRNA downstream 60856 325636 ~ 329837 (+) False LOC103032759
XM_022681627.1 mRNA downstream 60856 325636 ~ 329585 (+) False LOC103032759
TU246178 other upstream 58897 191957 ~ 199996 (+) True G181779
TU246212 other downstream 11891 276671 ~ 278173 (+) True G181799
TU246214 other downstream 17296 282076 ~ 286281 (+) True G181801
TU246236 other downstream 126834 391614 ~ 392130 (+) True G181818
TU246772 other downstream 2193514 2458294 ~ 2460322 (+) False LOC103029952
TU246773 other downstream 2260989 2525769 ~ 2569294 (+) True LOC111195173

Expression Profile