RNA id: XM_022681629.1


Basic Information

Item Value
RNA id XM_022681629.1
length 1727
RNA type mRNA
GC content 0.58
exon number 5
gene id tacr3
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 378228 ~ 426514 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGGCGTCCAGCACCATTTGCCCTCCCAGTTTGGCAGCGCTGGAATCAATCGACCCCCTCCACTCCTCCCTCCccttttctccatctctctttctctctctctatggacAATCAACAGGAGGGAGAGGAAGGAGCGCGCGCACACAGAGGGAATTCAGAGTTACTGAGCTAACGTTACTGATTGGACTTGCTTTTGACGTGCAGCGCGCGCGAGGCTGAAGTGGAGCCACCTGCCCTTTATACACACCGGCGATGCAGCAGCGCGCGCTAGCGTGATCAGCGCGTGCCAGGTACGTTGTGAGGAGCCAGCCAGCGCGCGCTCCGCAGGAACCCGCGTGcgcctctcactctctctcgcgctcgcgCGCCATGGCACAGTCCCAGAACGGCACCGCGCTCCCGGGGAACCTCACCAACCAGTTCGTGCAGCCCCCGTGGCGCGTGGCGCTCTGGTCCCTCGCCTACAGCACCATCCTGGGCGTGGCCGTGTTCGGGAACCTAGTGGTGATGTGGATCATCCTCGCGCACAAGCGGATGCGCACCGTCACCAACTACTTCCTGCTGAACCTGGCCTTCTCGGACGCGTCCATGGCCGCCTTTAACACGCTGGTGAACTTCGTGTACGCCACGCACGGGGACTGGTACTTCGGAGAGGCGTACTGCAAGTTCCACAACTTCTTCCCCGTCACCTCCGTGTTCGCCAGCATCTACTCCATGACTGCTATAGCCGTGGACAGGTACATGGCTATAATTCACCCGCTGAAGCCTCACCTGTCGGCCACGGCTACTAAAGTGGTGATCGTGTTTATCTGGGTGCTGGCGGTTGTCCTGGCCTTCCCCCTGTGTTTCTTCTCCACCATCAGAAAATTACCCAAGAGGACTCTGTGCTACGTGGCCTGGCCCAGATCCAGCGAGGACTCCTTCATGTACCATATCATAGTGACTGCACTGGTGTACATGCTGCCCCTGGTGGTGATGGGGATTACCTATACTATAGTGGGGGTGACGCTATGGGGAGGGGAGATCCCTGGAGACTCGTCGGATAATTACCACGGTCAGCTGCGTGCAAAGAGGAAGGTGGTGAAGATGATGATCATCGTGGTCGTGACCTTTGCCATCTGCTGGCTGCCGTACCACGTGTACTTCCTGATTACAGGCCTGAACAAGCAGCTGGTGAAGAGGAAGTCCATCCAGCAGGTCTACCTCGCGGTCATGTGGCTCGCCATGAGCTCCACCATGTACAACCCCATCATCTACTGCTGCCTCAACAGCAGgtTTCGTGCCGGCTTCAAGCGAGCGTTCCGCTGGTGCCCCTTCGTCCGCCTGTCCAGCTACGACGAGCTGGAGCTGAGGGCTACGCGTCTGCAGGTGGCCCGGCAGAGCAGCATGTACACCCTGTCCCGCATGGAGACCACCGTGGTGGCGGTGTGCGACCCGACGGAGCCTTCGACCAACCCGACCCGAAAAAGCCTCCTGAACCACCACCCCAACGGCTGCTCCCACTCCACCAAGAGCAGAGCGATCACCTACACGCCCAGCGACCCTCAGGAGGAGTTCTGCTGAAGACCGTGTGCCAATGCTGCAGTACTCGGGGGGACGACGGACAGAAGGAACATCTTGCCTCGTTTATCTTTCGCTCCATTTTATTGTGCATCTTAAATGAAGATTGAGAGATGAAGTGTATTTGAGGCCTGTTGTTGTGGGTTTTAGTCATTAAGGgccaaaaa

Function

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004995 tachykinin receptor activity molecular_function

KEGG:

id description
K04224 TACR3; tachykinin receptor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246229 lncRNA upstream 44983 332580 ~ 333245 (+) True G181811
TU246223 lncRNA upstream 71916 300118 ~ 306312 (+) True LOC111195150
TU246216 lncRNA upstream 85977 289010 ~ 292251 (+) True LOC111195149
TU246215 lncRNA upstream 95424 282369 ~ 282804 (+) True G181802
TU246213 lncRNA upstream 98438 279565 ~ 279790 (+) True G181800
TU246234 lncRNA downstream 6025 432539 ~ 433567 (+) True G181816
TU246238 lncRNA downstream 18567 445081 ~ 445298 (+) True G181820
TU246239 lncRNA downstream 66084 492598 ~ 500981 (+) True G181821
TU246362 lncRNA downstream 203393 629907 ~ 663519 (+) True G181927
TU246369 lncRNA downstream 249405 675919 ~ 676207 (+) True G181934
XM_022681628.1 mRNA upstream 36786 332130 ~ 341442 (+) True LOC103042564
XM_015604221.2 mRNA upstream 48391 325636 ~ 329837 (+) False LOC103032759
XM_022681626.1 mRNA upstream 48391 325637 ~ 329837 (+) True LOC103032759
XM_022681627.1 mRNA upstream 48643 325636 ~ 329585 (+) False LOC103032759
XM_022681624.1 mRNA upstream 63105 307677 ~ 315123 (+) True LOC103032143
XM_007235683.3 mRNA downstream 36809 463323 ~ 475354 (+) True bdh2
XM_022681630.1 mRNA downstream 49157 475671 ~ 495422 (+) True LOC103047018
XM_022681631.1 mRNA downstream 83137 509651 ~ 540134 (+) True suclg1
XM_007234577.3 mRNA downstream 721584 1148098 ~ 1153043 (+) True lrrtm1
XM_022681634.1 mRNA downstream 964897 1391411 ~ 1411319 (+) False LOC103025599
TU246214 other upstream 91947 282076 ~ 286281 (+) True G181801
TU246212 other upstream 100055 276671 ~ 278173 (+) True G181799
TU246178 other upstream 178232 191957 ~ 199996 (+) True G181779
TU246772 other downstream 2031780 2458294 ~ 2460322 (+) False LOC103029952
TU246773 other downstream 2099255 2525769 ~ 2569294 (+) True LOC111195173
TU246909 other downstream 2829853 3256367 ~ 3258850 (+) True G182356
TU246914 other downstream 2861424 3287938 ~ 3290258 (+) True G182361
TU247191 other downstream 3997399 4423913 ~ 4431946 (+) True G182577

Expression Profile