RNA id: XM_022681633.1


Basic Information

Item Value
RNA id XM_022681633.1
length 3490
RNA type mRNA
GC content 0.47
exon number 23
gene id LOC103025599
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 1391411 ~ 1412738 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAATGGTGGGAGCCGAAAGAGAGCATGCGGTTTTTAagttaaaacactgttaaactgTCCCTGAAGGGATGTAAAATACCTGATTTCTGTGTTTTCCAGTGATTCTGAGCCCTGTGTTGGATATACTGTCATTATTTGCTGTTCATTTCTGAGAGAAACTCTGAATCAGGACTGAGACGAAGTGAACATTTAGTGAAGCTCTGAACCGTAATCCTCTTCTCTGGATGGATAAAATAGCCTTTGGCTGCAGTAGTGGAGACGGACGGTCACAGATTAACTCCTCCCAACAGATTAGTGGACCTGGTGTGACTGTAGGGAAGAGTAGTTCTAAGAGACACCATGCCGTGCCTCCACACGGAGAGCCAGGCCGGAGAGCTCGCGGGCCCCAAAACCTCTGGAGACCCTGCTGCAGAGACCACTCGGAGGAGCAGGGAGAAGAAGGAGGAAAGGCATCGAGGAAGAGTTCTCTCTCCGTTGAGGAACTTACGGACTAAAGCCGAGAAGTGGGGCTTCAGAAAGGGCCTGgatgatggggagagagagtcAAATGAGAACTCAGAATCTACCACCAATCGCAGgatTAGGAAGAACAGCTGTTTTGTGAAGATGTCGACTGTCTTGGTTCAAATGCAGCCTGAATTAAACGTGCTTCTGCCGAGGCGGCGCAGGGAGTCCCACCCCCCCTGTGGATCCTCCTGGAGGCTTGCACCCTCTGCAGCACAGGACAGGCCATGGTTGTGTTTCTCTCTAAATCATTCAGAGGATTTagcaaaattaattctgtttCCAGAATCCAGCTCCATACATCAGTACCCGTTCCCACGAACAGCCAGATCACCCCGCTCAGCTGGGCCCTGTGGCTTAGGCAAAGGCTGTGATTGGATAATAGGCCTGTTGGGAGACAGAGCCAGTTATATGGGGTTGCAGGAAATCTGTGAAAAGGTCCTGGTGCACATCTGTGATGTTCTTGCAGCTGAACGCTGCAGTCTAGCCATGATAACCACAGATGAGACTGGAAAGCAGGTTTTGGGGCCTTTCTTCCACTCAACAAAGAGTGCTCACAGCCAGACCCGCCAAGACTGGGACAAATGCCTGATGGGACATGTAGCAAGCACAGGGTGGCCTCTCAACATCTCAGATACCAACAAGGACCCAAGATGTTCTAAAGGAGTGCATAAGCCGGTAGACTGTAGACCCAAGAGTGCACTGAGCGTGCCCATCCTAAACCAACAAGCAGAGGTTATTGGTGTCGTCATGGCAGTGAACAAGAAtggaaaagtgtgttttttctcgAAGAATGATGAGAAGGTTCTGTCATCACACATGGCCCTCCTCGGAGTGATTGTGGACAACAAGCAGCTCACAGAGAAAACAGACCAGCAGTGCCAACACAGCCAGGTGGTTCTGGAGCTGGTCCAGTTGATGGCTGAACAGCACCAATGCGTGGAAACTTTACTCACAAAAATGGCCACGGTCATCCTGCAGGCCTGTAAAGCAAATCTCTGCAACGTGTTCATTTCAGATCCAGAGAGCAAGgAGCCATTCTCATGGATGGTGTGTGTGGAAAGCCAATCAACACTCTCATCCAGAAGagacgTGGACCAGCAGGATGTCTTCTATGCATATGCTTTGCAAGTTTGGAACAGCATGGAAATGCTAAACGTTGCCATGGAGAGGAGACTGACTCAGCCAGTGGCTGCTGGAGTTCATTTGCACAGTTTAATCTGTGCTCCAATCAGAAACAGACAGAAGAAAGGGGTTCTGGgtgtgtgtcaGCTGCTGAATACGGCCAGTGCAGATCCTGGTGAAGGCAGCAGTTTTAGTACGGCGGAGGAGCGCCTCCTGCAGATCTTTGTGGAGTACTGCTCTCTGGCCTTTCACACTGTCAGTGTCCAGAAAACAGCAGAGAGGAGCCTCAACAAACTGACCGTCACTGAGGAGGTTCTTTCATACCACTTGTGTTCATGTGCAGTGGAGGCAGAGGCAGAGGATTTCCAGGAGTGTATGGTCCCCTCGGCGCTCTCTCTGGGGCTAATGGACTTTAGTTTTAGCGACGCTGACCTGCCTGCGGCCGCTAGCACTCAGGCCGCTGTCCGCATGTTCCTGGACCTCAACCTGCTGCAGAACTTCAGCATGGACTACAAGATCCTGTGTCAGTGGGTATTGAGTGTGAGGCGGGGCTACAGGTGTAACATAGCCTATCACAACTGGAGCCATGCTTTAAGCACCGCCCACTGCATGTTTGCCATTCTCAGAAGGACGGAGCAGCTTCAGAGGAACTTGAGCAGTTTGGAGATTTTGGCTCTGATGATTTCAGCACTGAGCCACGACCTCGATCACAGAGGAGTGAACAACTCTTACATAGAGAGAGCACAGCAGCCCATAGCtcaactctacacacactctgcactgGAGCATCATCACTTAAACATCTGTCTGCTCATCCTCAACACCCCTGAGACTGGAATTCTGGATGGTCTCTCTGCAGAGGATTATAAAGCCTGTATTGGGATGATTGAGAAGAACATTCTGGCTACAGATCTCAACGTTCACCTTCAgaaaaGAGCAGAACTCTTCGAGGTGGCTGAGAATCACAGACTGCAATGGAAGAATGAGGATCATAGAGATCTGttaagGTCAGCACTGATGACAGCCTGTGATGTGTGTTCGATCACTAAACCATGGCCAGTTCAGAAACGGGTTGCTCAGCTAGTAGCAGAAGAGTTCTTTGCTCAGGGCGATCGAGAGATACATGAGTTCAACATTCAGCCAATCgcagtGATGGACAGGGTGAACAGCACTCGTTTACCTGAGCTGCAGATTCAGTACATCGACTCCATCTGCACTCCTTTATACCAGgCCTTATCCACTCTGTTTGAGCCGTGTGCTCCTTTGCTGGATGGTTGCATGAAAAACAGAGATAAGTGGGAGAGTCTGGTTCagggaaaagaagaaaataaagatgTGGTGAAAGGATGAGCTCTATAAGCTACAGTCCAATCATGTCTGCTTTTGTTTCATAATCAGTTTCTGTTAGTCCATTCGTTTCTTTACTTTCATCTAGAGAAGGAATCTGTATTTATTCGATATCATAgagatttattatatataaaatagaaaactgaaataaagtgaaagTGTAATTAAGTGAAatatctaaacctaaacctgtaTGTGATTTTGTGGTTTTGCCTTTAATTGCTGTTAAAGTATCCTGGGATCCTTTGTGACCTCACATCCTGTTACTCGTCACATTAGAGCTTTATGTGCATCAACAACTCCTCTTAAATCTCCTTTGTTTGTGTGATGATGCACTTCCACAAACATCTGCTATTAAAACCAGATTAATGGATccttgttctttaaaaaaacagactcCTCCCACTTTCATCCAAATTTACAGTCACATGATTTGGTAATCCTAAAGATTCACATACAGTACTTCACAGATATgtaatattgtatcatgttcctctatgaataaataaat

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246429 lncRNA upstream 13206 1375197 ~ 1378219 (+) True G181982
TU246428 lncRNA upstream 13206 1376360 ~ 1378219 (+) False G181982
TU246391 lncRNA upstream 397456 915260 ~ 993969 (+) True LOC103046702
TU246448 lncRNA downstream 135882 1547201 ~ 1549028 (+) True LOC111195170
XR_002651504.1 lncRNA downstream 136906 1548225 ~ 1554782 (+) False LOC111195170
XR_002651505.1 lncRNA downstream 140120 1551439 ~ 1554782 (+) False LOC111195170
XR_002651503.1 lncRNA downstream 140147 1551466 ~ 1554782 (+) False LOC111195170
TU246443 lncRNA downstream 140228 1551547 ~ 1554782 (+) False LOC111195170
XM_007234577.3 mRNA upstream 238382 1148098 ~ 1153043 (+) True lrrtm1
XM_022681631.1 mRNA upstream 851291 509651 ~ 540134 (+) True suclg1
XM_022681630.1 mRNA upstream 896003 475671 ~ 495422 (+) True LOC103047018
XM_007235683.3 mRNA upstream 916071 463323 ~ 475354 (+) True bdh2
XM_022681629.1 mRNA upstream 964911 378228 ~ 426514 (+) True tacr3
XM_022681640.1 mRNA downstream 30131 1441450 ~ 1446518 (+) False uchl1
XM_007229273.3 mRNA downstream 30134 1441453 ~ 1446518 (+) True uchl1
XM_022681644.1 mRNA downstream 36383 1447702 ~ 1517348 (+) False LOC103024236
XM_022681645.1 mRNA downstream 36383 1447702 ~ 1517348 (+) False LOC103024236
XM_022681642.1 mRNA downstream 36383 1447702 ~ 1517348 (+) False LOC103024236
TU246236 other upstream 999295 391614 ~ 392130 (+) True G181818
TU246214 other upstream 1105144 282076 ~ 286281 (+) True G181801
TU246212 other upstream 1113252 276671 ~ 278173 (+) True G181799
TU246178 other upstream 1191429 191957 ~ 199996 (+) True G181779
TU246772 other downstream 1046975 2458294 ~ 2460322 (+) False LOC103029952
TU246773 other downstream 1114450 2525769 ~ 2569294 (+) True LOC111195173
TU246909 other downstream 1845048 3256367 ~ 3258850 (+) True G182356
TU246914 other downstream 1876619 3287938 ~ 3290258 (+) True G182361
TU247191 other downstream 3012594 4423913 ~ 4431946 (+) True G182577

Expression Profile