RNA id: XM_022681645.1


Basic Information

Item Value
RNA id XM_022681645.1
length 8361
RNA type mRNA
GC content 0.49
exon number 33
gene id LOC103024236
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 1447702 ~ 1517348 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcatatTTTTAGCGCTGCTCGGCCTGCCAGTGCAGGGCTCGCGCGCTCGCGCCGCTCCGGTCCCGCAGTAGCagcaggagaaggaggagggagCTGTGTGTGAACGCGCGCGAGCTGGAGGCGTGCTGTGCAGGACATTATAGCGGACAGTGGAGCCCCGAGCTCGAGCGGACCGGAGGCGCGTTCCCGCCTGTGTGGAAATGGCGAGTCCCAATGAggagcagcagcatcagcacgAAGCCGGAGAAACGAGCCAGGAGCCCGCCGTGCTGGAGGCCCAGAAATGGATAGAGGCAGTgactgggaggagttttggaGAGAAGCACTTCAGAAGTGGACTGGAGAATGGCATTCTGCTGTGCGAGCTGCTGAGTTCCATCAAACCAGGACTTGTGAAAAAGATTAACAGACTCCCAACCCCCATCGCAGGACTGGATAATCTCACCATGTTCCTGAGGGGATGTGAGGAGCTGGGATTGAAAGGAACGCAGCTGTTCGACCCTGGAGACCTGCAGGACACTTCCACACGTGCTAACCTCACGGGTTCAGACCTGAGTCGAAAGCTGAAGAACGTGCTGATAACGATCTACTGGCTGGGAAAAACTGCTAACAGCTGCGCGTCGTATAACGGTCCGACACTCGACCTGAAGGAATTTGAAGGCCTTCTGTCCATGATGAGAAAGgagtgTGTAAGTGAGGAGTCAGACTCTCCTAAGCGGAATATACGAGACAGTGGTTATATAGATAATTGGGAATCCGAGCGTTCTGATTCGCTGTCTCCACCAAGGCACGGACGGGATGACTCATTCGATAGCCTGGACTCGTTCGGTTCACGATCGCAAAACACACCGTCCCCTGACACTGTCCTCCGTGGCAACAGTGACGACTCAGAAGGTGACGGTGGATCCCGGAGGTTGCCAGATGTGCGCAAAGATGACATGTCTGCCCGCCGGGTGTCCTATAAAGAGCCGCGTGCCGTGGTGCCCTTTAACCAGTATCTTCCCAACAGAAGCAACCAAACCAACTACATTCCTGCTCcgctgaggaagaggaggagtgagcgagaggaggagtggaggagcACGAGCAACGCCACCTCCCCTGTTAGTGGAGAGAAACCACTCAGagagGAGTGTGTTGGTGCACTGAAAGAGGAAGGGAGCAGCACAAACTCCCAGAGAACTGTTACCTGGGCAGTGGCCAAAGGGGTGGAGCCTGAGCTTGGGGAGGAGCTAAAGAAGATAAGAAAGCTAGAAAAGGCGGGAATTAAAGTGTTGCCCTCCTCTGTGCGATATAACAACAGTGCTAAAGTTATTGCTGCAGAGCCTGATCAGCTCAGGTCTCCATCACCGGACATCATTCTTCGACGCGACAACGAATTCATGCGGGCGGACCACCCGCACGACTGGGACGCCAACGAGGATGATGACGATGAAGACGAAGACAGGAGAGTCCCGGACGTCCAGAAGGACGATCTGGCATCTCGAAGAGCACGCATGAACCAGCCGCGTCCCGGTGTGACGCGTCACTTCCTGCCGGTGGGGTGTAGCAAGAAGGATCAGGAGCGGTGGGAAGGGATACGACTGGCATCCCAGCATGCTGTGCTGGAGAGGATGGAGAAAATGGAGCAGGAGAAAAGGAGCGAGGCTGACTCCGCCTCCTCTGAAGAAGCATTGATTATAACCCGTAAGGAGAACCCGTTTCTCACTCCTCACGGGAGAAAGAgggctgaggaggaggaggaggagactgATGAGGAGGGAAGGGGGAGGGCGGTGGTGCCGGACCGCTTTACGGATGACCTGGCCAGGAGGAGAGCTCGGAGCCGGTCCGGCCCACAGAGAGACCCCCGCCAGTCTCTGGTTCAAAAGGCCATCACTCAGTCTGACCTCGAGAAGTGGCAGAGGCTTTCTCTGCACACTGAAAACAGCGAggcctcctcctcttcctcctcctctactGAGGTGTCAATCATAACTCGCAAGGACAACGCCTCCCTGACCCCTGAAacagtgaggcagagagaggatGTGAAGGAGTGTAGTGTTGAAAGGGAGactgaagaaaaagagaagggggTGGTGCCTAATGTACAGAAAGATGACCTGGCCAGGAGGCGTGGCCAAACTGTCGCACTTCCACAGCAGGACCCGCGACTGACCCTGGTTCAGACGGCTATCACCCAGTCAGACCTGGAGAAGTGGCAGAGGCTCAAGATGAGCACAGACAGCAGtgaccCGCCCCCCGCCCCGCTGTGCCAGGCCTGCCTTGAGAAAGGCTCCATCCTCGCCGCCCCCCCTGCGAGGGTTGCCAGGGGCGACCTGGCCGCCGGCCGAGGGCGCTCTCCTAGGGACCGGCGGCGTTTTGTGACGTTCGGGGGGGTGACTGAGCTGGAGTGTGTGTcgtggagagaggaggaggaggaggaggaggaggaagggcggagagagggagagggggaggaGTCAGAGACTCTTCGACGCCTCCTCTCCACGGCAACTGTTGCCATGCCCACCTCAGGGGTGAGCCCAGGGCTAACGGCGGTGAGAGTGGTGGGCAGTGAACATGCTCCTAACacagctccagcctcagcttctGAATCTCCACTAGCTCTGGTCTCTGATGTAAAACGCTCCTCAGCAGAGAGGGACTCAGctctggagctgaggctgactGAGAAAGTGAAGGTTGAGAAGGAatatgaggaaaaaaaagacaaagaggaggaggaggaagaggaggaggagaatgaGAAGGATAGGCAGCCAGACGTGGAAAAGGATGACATGATGGCCCGGCGGACAGGGCTGTTTCAGAAGGGAATGAGCGGGACGTCCTACAACCAGTTTCTGCCCCTGCCAGGCACAAGGAAAAAGGTGGCTCCTGTTGGGCAGAAAGAAGGAACACCTCTAAGCAGATCTGCAGTAGTTAAAGATCCTCTGATGCTGGAGAGAAACATAAAGACTAAGCGCTTCAAGATCGGACAGAGAGCTGACCCGGTAAACACGGACCCACCGTCCGTCTCTCACAAGGAACCAACTGTTCTCAGTTCAGCTTCAGCCCACagtgatgattatgatgatcaGCGTGATGACGAAGGTCCGCTGCCTGACCTGGAGAAGGACGACATGCTCGCAAGGAGAGCAGTATTGCACCATAAGCAGAGCGGGAGTCAGGTCCAGGCGTTTAATGTCTTTCTGCCTAAACCTGGAGCCGCCAAACGCAAAACTGCCACCGCTGGTGGGCAAAACCAgggcagtgagagagagagaaaacccaCTGCTGAAAGCGCTGTGACCCCACCTTCAGCAGACGTTCACAACACCCCCGAGAAGGGCCCTCAGATGCTGGACAGGCAGGAGGCGGGCACTGAGGGTGTGATGGGTGGCAGAAGTGCTGTTTTAGGTGGGGCCAATGCCAAAAGCCCCTCCCCTAAGCCTGACCCCACCCCACGGCGCCCGTTTTGGCTGGAAGATGATGATCTCCCCCCAACATTCAGTCACAAGGCTGCTAATGTTTCTGATGAATCAGAGAGCGTCAGTTTGATTGACATGCGtgatgaggaggaggtggaCACCCTGTCGCCACACAGCCAACTGCGACACGAGAGACTCCACAACCAGTACAACAAgctgagagaggaggaggaccAGTGGCAGGATgaCCTCGCTCGGTGGAAGAACCGAAGGCGGAGTGCCTCTCAGGATCTCataaagaaggaggaggagaggaagatgaTGGAGAAACTGATGCTGAAAGAGGAAGGTGGCCCTCGCAGGAAGAGCATCAAAACCTACAAAGAGATTGTGGAGGAGAAGGAGCGCCGAGAGCATGAGCTGCACGAGCTCTACTGTACAGCCTCGACTCCAGAGGAGAAGGCGGCGGTGCTACAGCGCTACGCCCTTCGCTTCACCATCAGCGACGCTATACTAGAAAAACTACAACTCCCAAAACTCCCTTCTGCCTCTACACCTGAGATCACGCCCTCCCCCACCCACTCTAGGCAACAGACCACGTATACACTTAATGAAGAAGCAGAACTTCCAGTGGATCTTCAGCCCGCTCTAACACTACAACACCAAACACAGCCCCACCAGCACATGCCTCAAACTTCAGTACACAGCCTTCCCAAGACCCCGGAGTTAATACCTGCACCTGTCCCTAAAGTCCCTAAAGTCCGTAAAATCCCAGAAGTACCGCACTCGCCTACACGGATACCCCCTCCACCCTCCAAACCCGTGCCGCTGCTGACCCCGAAGCCTTACAGCCAGCCCAAGCTCAACCAGGCTTCTCACAAATCAGTTAAAACTGATGGATTGGTGCGATTGAATGGAGAATGTGGCGTAGAGGAAACAAGAGAGACCCCGGCAGTGACTCCAGTAGTGCGACCTGTCACCTTCTGCCCAGCGCCTCCAAAACCACCAGCCAAAACTCACCAACAAGAACCTGAAGTCTCACCATCCAGCGAGAGCATAGCACCACAAACCACTCAGACCTTATCTACTGTCTCCAGCCAGATAAAAGAGGAGACAGATGCTCCGTGCAGTCCTCAGGAGAAGAGCAGTGAGGAGGAGACCTCCTCGACACTCACACATTCAGAAATAACAGAAGAGAAGCAGACAGTTTCCAACACAACAGTGAAGCGCAACTGTGTTATAAAGACAACCATTGTGACGGAGCTCACGCAGATCCACCCAGTTCCTACAACAGATATGTCCAGTACTGACCAGCTAAGCAGTTCAGATGCCTCAGCGCAGAAGCCTTCTGACGAAGTTTCTTCTGCCGACTCAAGACAGGCTGATGATATGTCCCAGTCACTTTCTCTGACAGACCCCTCACTCACCTCCAGTAACTCTAGGTTACGCTGGGAGTTCTTCGCTCCGACAGACGGACTTGACTTCACCAGCGAATGTGAGAAGTATCAGCAGGAACAAGAACGGCTAAAGAAGGAGTGGGAGAAGGCACAGAAGGAGGTGgaagaagaggagaggaaaCACAATGAAGAGGAGCGACGGATCCTGGAGGAGACCACAACACCATTGACCCCAAGCATTTCAGCTCAGTCTCCCCCCGCCGTAACAGAATGTCCTGCGGTTTCCACACCTCCTCAAGACTCGGTCGTCCTCTCTCTGGCTGACTGGGATAAAAAACGGGAAATGCtggagaaacagcagaaaaATGGGGTGGAACACAGCACTGATCAGGCAGAAGCAATCGCACCCGCACAGCAGAACGGCCAAGGAGCAGAACATCAGGAGAGTCAGTCAGCTACACCACAGCTGCAGTTCATACAAGATGGGACTTGGAGCTCTAAGTCAGAGAGCAGGTCAGAGTGGAAGAAAACAGCCTCGCTGGATCGCAATACAGGCCCTTCTCAGGCACAGCCCCCCAGaatgaggagGACTGGCTcgtatgaaaacattttagggACGCACTCATCTAATTCACCTCCATCGTCACAAGACACACCGCCCCCATCGCCCAGCAGGTCAGTAAGTGGTAAGAAGCTTTGCTCCAGCTGTGCACATCCACTGGGGAAAGGAGCGGCTATGATCATCGAGACTCTGGGGCTCTACTTCCACATCCAGTGCTTTAAGTGTGGTGTGTGCAAAGGGCTACTTGGTGACACAAGCACAGGAACTGACGTTCGGATTCGGAACGGTGTTCTCAACTGTCAAGACTGCTACATTAAATCACGAGCTGCTGGCCAGCCAACCACCTTGTGACCCCTTTGCCAAGCCAACCGAAGCCTAGACCATTCCCAAGAAGAAGACATGAGAGCTGATGTTTCAATTCTGGAGTGATTTACATAAAAGCACAACCATTCAGATCACCCTGCAACTCAAACGGATGAAACTGGGATATTTACGgcgtgtttgtttattattctgGACTCTTAATCACACCAAGCTGCAAATATGTGCTTCTGACCATTAGACACATGAGTGAAAAAATGAATTGTGGTAACAAGTATTAAAACCTCACGTTAGCTTGTTGTACAAAATGGATCTTTCCACTCGCCTGGATAGTATAGATCAATTAAATTAGCAATAAAACACAGACCCGCCTTTTCAGCGAGAAAGGTTCTACTGAgattataatgtttaataacgtTTAATAACCTAATCATTGAGCAGCTGgataagagaaagagatgtaGCTAGGGAAGTCAGCGGTTTTGCACATTGGACCCTCTGAACTGAGCATATATATACGGGCTTcaactttacatttttacatcggATATGGGgggatgctaaaaaaaaacttaaacaaatGTGAAGGATGTGAACATAAGGCAAGAAATCCAATTCCTGCCAATTTTGCAGGAAAGTTGGGAATTTGGTAACCAAGCAGGAAAAGGACCGCTGAATGAAATGTTCATAATTTTAAAACTGTGGTTGAAATTTTaacttggatttttttttttgttctattccACTCTACAGTTCAATTTAGTTAAATTTGTGTgtctttttgtgcttttgtgcACTCGCTCCTCTTGTTcaattttagactttttttttgttgactttAATTCGTTTTTAACAGTTAAGCAATGAAAGCATGTCCTGATTTTTGATcgaaactgaacaaaatgaaacatttggtgCCAGGGTTTCCATTAaatttgccacttttttcaccACTGGGTAAAATTTATAGTCTACAGGAATTGTTGACCTGCttgtcaaagaaaaaaaagctgttacaaatttttatttaccatataaacatttttaatattccaGCAGGCGTACCAACAaagcagctagctagctactgtaCGTTTACCTCAacagttaactagctagctagtgaatttacctcagtagtgctattctagttACATTATGTGAGTATTAactgtattttacacagtttaaagTAATTCATACAATactaaaatgaaaacattgcATCAAATGACTTGGCGTTAAATAAGAACATTGCTTTTTTTTGCCAACttaggacgttttttttttttttgccaaataatTCAGTACATCCCTATTTGTAATTAATCCGTagtcattttattttgtcaggaaaactgataaatgttctattttggAAGGAAAATTAACCCCCCGTATGAAGTTGAAAGTTGAAAGTGAATTTCAGCATGATAAGCAATGTTAAGCCCTTATAGCTTGTAGCCTTAGGAATTGATTAAGCCCATCTTTACTTGTAGCCTGTCCAAAGACTTTTTGCACCATTTCGTTCAATTTCAGCCGGAAGGTGAATAATGGGATAAAGCCTTCAAGTAGGCGAAGTTTtcagttttacttttttcctacattttgCCTTAATAGCAGGCACTACTTAATGCTGCATGACTCTGCGACAGGCCGATTGTGAAGGAAGTGACTGGAAATCTTTCATTATCATctcagaaaaagcaaaaaaaaaaaaaaaaaagacaaaaaactcTTAATAAACCTGGTTTGTTAAGCACGTGGTTTTAAGTTAATCGATGTGTTAACCTGTgttttaagtattatttttatttctgttcttgTTCCTCCTCTCGTTTGCTCTCATTTGCTTCAATTCGTGATCAGATATATTAGCCTAGCTTGCGGTTTGAAATGCATGAAGTTTGAAATTGCGTTATAATTAGTGAATGAATTTCTATTTCCATTTTGGTTCTTCTTTAcgttgttacattacatttcgcAGCCGTtcggcagagaagaagaaaaaaaaaaccgtTAAGGTTGTTTGTCTTAGtttcttagtttttgtttttgtttttctttcttttctgttgtTCCAGACAGCTGTAAATCATACACATTGCTGTGTCGTGCCTTACGAATGATTGATTGCACCTTTGGAAGGAGGTTGTTGTGTGCTTGTGTTCCGTATGCAACGCTCAGAGcaacattttccattttctttgcTTGTTTGTTCTACCATTGCAGATGGTAAACAGATGGATATATGCAGAAATGACTATTTCATACCAGTGTCTTTTTATTCATAAACCCTGTGATCTGCGTAACGATACTTCTGCAACGTTTGGCTGTTGTGAATGGGGCTTGGCATGCTCTCAAATTATGTTTTAGTAtcccagatctgttttaaataacCTAAAGGAAATACAGGTCATGGGCCATAGGTCATATGATCTGTCTTATTTGTGTAGGCTAATCTCtaattaagatatataagaATTATGGAGCGATGTGATGTAGCCTACGGTTTTCTCACTCGGATGGAGAAACTGGCCCATGTGTTAaagctgtgtatttattttatcctCTTAAAGACGACAGATAGGACAACTTGGCAACCCTTGAAATGCAGTGGGTTTTATAGCAagtttatgtttataaataaactattttaaatgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246429 lncRNA upstream 69483 1375197 ~ 1378219 (+) True G181982
TU246428 lncRNA upstream 69483 1376360 ~ 1378219 (+) False G181982
TU246391 lncRNA upstream 453733 915260 ~ 993969 (+) True LOC103046702
TU246448 lncRNA downstream 29853 1547201 ~ 1549028 (+) True LOC111195170
XR_002651504.1 lncRNA downstream 30877 1548225 ~ 1554782 (+) False LOC111195170
XR_002651505.1 lncRNA downstream 34091 1551439 ~ 1554782 (+) False LOC111195170
XR_002651503.1 lncRNA downstream 34118 1551466 ~ 1554782 (+) False LOC111195170
TU246443 lncRNA downstream 34199 1551547 ~ 1554782 (+) False LOC111195170
XM_022681640.1 mRNA upstream 1184 1441450 ~ 1446518 (+) False uchl1
XM_007229273.3 mRNA upstream 1184 1441453 ~ 1446518 (+) True uchl1
XM_022681636.1 mRNA upstream 34964 1391425 ~ 1412738 (+) False LOC103025599
XM_022681651.1 mRNA downstream 1331 1518679 ~ 1527400 (+) True exosc9
XM_022681652.1 mRNA downstream 11768 1529116 ~ 1544361 (+) True LOC103023290
XM_022681660.1 mRNA downstream 49592 1566940 ~ 1570671 (+) True LOC111195172
XM_022681659.1 mRNA downstream 50740 1568088 ~ 1570670 (+) False LOC111195172
XM_007229270.3 mRNA downstream 54594 1571942 ~ 1575056 (+) True LOC103022979
TU246236 other upstream 1055572 391614 ~ 392130 (+) True G181818
TU246214 other upstream 1161421 282076 ~ 286281 (+) True G181801
TU246212 other upstream 1169529 276671 ~ 278173 (+) True G181799
TU246178 other upstream 1247706 191957 ~ 199996 (+) True G181779
TU246772 other downstream 940946 2458294 ~ 2460322 (+) False LOC103029952
TU246773 other downstream 1008421 2525769 ~ 2569294 (+) True LOC111195173
TU246909 other downstream 1739019 3256367 ~ 3258850 (+) True G182356
TU246914 other downstream 1770590 3287938 ~ 3290258 (+) True G182361
TU247191 other downstream 2906565 4423913 ~ 4431946 (+) True G182577

Expression Profile