RNA id: XM_022681679.1


Basic Information

Item Value
RNA id XM_022681679.1
length 1663
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC103037633
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 3524196 ~ 3535052 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGACAGGGACACACTGTGCGGCGGGTGAGGATGTTGTGCAGGTCGCTGTGTGGGGGTCTGCGGGGGGGTCTGCGGGCGGTGGCAGGCAGGAGAACACCTGTACCTGCTGCAGCTCTGCAGGCCCGTCACATGTCCTTTGGAATTCCTACCTCAGGCTCAAACCTGGCCATCATGGTACTGGGAGGAGGCTCTCTGACTGCTGCTCTCTTCTATGCGTATAAGACTGTGCACTCCGACAGTGTGAGGTACAGCAACCGCATCACAGACATTGAGACCAAACTCACAACTCCAGCAGATGAGCCAGCTTCCATTGCTGAGGTGATGACAGTAAACGCAGTGTCTGAGGCTGTGGAAAGCGTGGAATCTGCAACTGAAGCAGCGTCAGAGGCTTCCGACCCGGGGCCTAACCTCCCAGCGGATGTTTCCGCAACAGAAGAGCCAGCTGCTGAGACAGTGGTTGCAATAGCAACAGAACCGCCCCCTGAAGTCAAAGAGGCTGCTGAAGATCTGGTTAGCGTGGCCATGGAAGCAGCCGAGGCAACGGTGGCTCCGGTGTTGGAGGCTCTGGACGCTGTGAAGGTTCTTAGCAGTTCTGTGGCAGAGATGGCTGCTGCTTCAGTGGGGGACGAGAGCAGCTCAGCAGCACTAGCGCCCCCCATTGGGCGAGCAGAGGAGCGGAGGGTGGTTTTGGCCGAGGAAGTCAAGCTGGAGCAAGTTTACGAAGATTTTGAAGCCTCTACAATGCCCCTGCTGGTCTGGAGGACACTTCACATGTTGGACATGTGGAAAACGAATACTCTCCCATTGGTTTAGAGGGTGCTGAGGGTCCTGAAACCTCCCCATTCCATAATGCTGGTCTGGAGGACACCTTATATGGGGGAAACGTGGAACCTGAACAGTCCATAATGTACCCCGCTGGTCGGGAGGAGAACACAGCGCAGGATGATTGCCTGGAGGATTACACAGCAGCCTTGGAGTCTGTGGAGGAGACTGgagctGAAGATGCAGATGAAAAGGACACAAGGGCGATGTGAAGAAAACTGACTTCTGGAACCTGGAGTCAAACAGTCAAGCTTGATACTATGTTACTTTGTTACTATGATACCCTGTTTCCATATTAGTATGTTACACTATATTAGTATATAGTTACTTTATTACCCACCCGGTTACCTTGTAACACTGTTAGCCTAAAACTGTTACCCTTAAACCTTGTAACTATGCTaccttttttacattgtttccaTATTAGTATGCTATTCCATTACCCTGTTACCTTGTTACCCTGTTGATTCCCTGTTACCATAATTGAATGCTACtctatatttttatgttactCTATTACCTATTCTGTTACATGGCCCTGCTCACTGATACCCTGATACCTTATAACTATGTTACCTTGTTTCATTGTTAGCAGGTTGCCCTATTAACATATTAGTATGCTACTCCATTACTCTGTTACCTTGTTACTTTGCTATCTTATCATATTGTTACCCAGTTACTCTTCTGTTTTGTTGTTATGCTCTTACCTTGTTACCCTGATTCTTTGTGATTATGTTACCTTGTTGCATAGTTTTCATATTATCCCTGTTAGCCTTGTTAGATTGTTACCCTGTTGTTTCCCTGTTACCATAATTGTATGGTACTCTATTAACCTATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246967 lncRNA upstream 25502 3492479 ~ 3498694 (+) True LOC111195151
XR_002651491.1 lncRNA upstream 25650 3492464 ~ 3498546 (+) False LOC111195151
TU246964 lncRNA upstream 43780 3478291 ~ 3480416 (+) True G182396
TU246934 lncRNA upstream 126936 3331203 ~ 3397260 (+) True G182371
TU246938 lncRNA upstream 184380 3337528 ~ 3339816 (+) True G182374
TU247094 lncRNA downstream 125177 3660229 ~ 3660492 (+) True G182507
TU247096 lncRNA downstream 130809 3665861 ~ 3666103 (+) True G182509
TU247097 lncRNA downstream 131167 3666219 ~ 3666497 (+) True G182510
TU247098 lncRNA downstream 179557 3714609 ~ 3714820 (+) True G182511
TU247122 lncRNA downstream 374851 3909903 ~ 3917616 (+) True G182530
XM_015601168.2 mRNA upstream 87152 3399191 ~ 3437044 (+) True LOC103038692
XM_015601169.2 mRNA upstream 87152 3399191 ~ 3437044 (+) False LOC103038692
XM_022681677.1 mRNA upstream 87152 3399192 ~ 3437044 (+) False LOC103038692
XM_022681678.1 mRNA upstream 87152 3410173 ~ 3437044 (+) False LOC103038692
XM_007232792.2 mRNA upstream 143653 3344537 ~ 3380543 (+) False LOC103039527
XM_007232786.3 mRNA downstream 1311 3536363 ~ 3550525 (+) True LOC103037959
XM_007232787.3 mRNA downstream 5791 3540843 ~ 3550525 (+) False LOC103037959
XM_022681680.1 mRNA downstream 280351 3815403 ~ 3827765 (+) True pcdh18
XM_022682131.1 mRNA downstream 860763 4395815 ~ 4423038 (+) True sclt1
XM_022681687.1 mRNA downstream 939681 4474733 ~ 4479749 (+) True LOC103036009
TU246914 other upstream 233938 3287938 ~ 3290258 (+) True G182361
TU246909 other upstream 265346 3256367 ~ 3258850 (+) True G182356
TU246773 other upstream 954902 2525769 ~ 2569294 (+) True LOC111195173
TU246772 other upstream 1063874 2458294 ~ 2460322 (+) False LOC103029952
TU246236 other upstream 3132066 391614 ~ 392130 (+) True G181818
TU247191 other downstream 888861 4423913 ~ 4431946 (+) True G182577
TU247365 other downstream 1400556 4935608 ~ 4941130 (+) False LOC103029349
trnai-aau_13 other downstream 1640784 5175836 ~ 5175908 (+) True trnai-aau_13
trnai-aau_14 other downstream 1671034 5206086 ~ 5206159 (+) True trnai-aau_14
TU247511 other downstream 1891815 5426867 ~ 5427255 (+) True G182790

Expression Profile