RNA id: XM_022681782.1


Basic Information

Item Value
RNA id XM_022681782.1
length 4177
RNA type mRNA
GC content 0.42
exon number 10
gene id cpe
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 8801144 ~ 8846414 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagatatacagcagcagcaggaggaggagagatagaggtagagaggtagagagagtcgGTCCTCGGTCACGGAGCGGTCGGTGTTACTCAGCGAGCTGAGAGTCAGAGCGAGCCCGAGAGAGAGACGCTGATCTGCGGCCAGTCATGTCGGCGGCGGCGGTGTTGTTGAGCTGCGCGGCGGCGGCGGTGCTGCTGGTGGTCGCGGCCCCGGGCGGAGCGgctgcggcggcggcggcggagaGGACCGGAGGCAGCGGCGGGATCTCCTTCGAGTACCACCGCTACGAGGAGCTGCGGAAGGCGCTGGTGGCCGTGTGGCTGCAGTGCCCGTCCATCAGCCGCATCTACACGGTGGGGGAGAGCAGCGAGGGCCgcgagctgctggtgctggagatCAGCGACAACCCGGGGGTGCACGAGCCcgGTGAGCCGGAGTTTAAGTACATCGGGAACATGCACGGGAACGAAGCCGTGGGCAGGGAGCTGCTGATCTACCTGGCCCAGTACCTGTGTAACGAGTACCAGCAGGGCAACGACACCATCATCAACTTGATCCACTCCACGCGCATCCACATCATGCCCTCCATGAACCCCGACGGCTTTGAGAAAGCCGCCTCTCAGTCTGGGGAGATGAAGGACTGGTTCGTGGGTCGCACCAACGCTCAGGGTATCGACCTGAACCGCAACTTTCCTGACCTGGACCGCATCGTCTACATGAACGAGCGAGAGGGAGGAGCCAACAACCACCTGCTGAAAAACATGAAGAAAGCAGTGGATGAAAACACCAAGCTCGCCCCCGAGACGAAGGCGGTGATTCACTGGATCATGGACATTCCGTTCGTGTTGTCCGCCAACCTTCACGGAGGAGACGTGGTGGCCAACTACCCGTACGATGAAACCCGCAGTGGCTCCACCCATGAATACAGTGCCAGCCCTGACGACATGGTGTTTAAGTTGGCCAAGGCGTACTCCGTCTACAACCCTGTGATGTCGGACCCCAAGAGGGCGCCCTGCCGCAAGAATGACGACGACTCCAGTTTTAAAGAGGGTATCACTAACGGAGGGGCCTGGTACAGCGTGCCTGGAGgCATGCAGGACTTCAACTATCTGAGCAGTAACTGTTTCGAGATCACGCTGGAGCTGAGCTGCGACAAGTTTCCTCCAGAGAACACCCTCAAAATGTACTGGGACCAGAACCGCAACTCCCTCATCAACTACTTAGAGCAGGTTCATCGTGGAGTTGCAGGTTTTGTTCGTGACCTTCAGGGCAATCCCATCTCCAATGCCTCTGTTTCTGTGGAGGGCATCGACCATGATTTAACCACAGCTAAGGATGGTGATTACTGGCGTTTATTGACTCCCGGGAACTACAAAGTTTCTGCTTCGGCTCCTGGATATCTGACTGTAATCAAGAAAGTGGCCGTCTCCAGCACCACTGCTACTCGGCTGGATTTTGAGTTGGAGTCTCTGGAGGAgcggaaggaggaggagaaggaggagcttATGGATTGGTGGAAGATGATGTCGGAGACGCTCAACTTCTAAAACAGCCAAAACAGCCGCAACTGTCAGGTCCTGATGGGCGGAGGACCTCACGAGCATCCTgggtttaaaatatttcatcgtcatcatcgtcgttgttgttgttgttgttgttgtgtgtgtgctgaccCACTTTTTAGCTTATGTTTTGAGGGCACTACATCTGGACGGTTGGAATATTATGAATATTATGCATacgaatattaataatatatgtcaTGGACTGTGACAGTTAATGCTTACGAAAATAAGATCTTGCTTACAAAGTTTCTGGGCAGAATCGGTAATCTGGGGACGTTAGCATTTTTATAATGGGTATATGAAGTCTGATTGTAGCGCCCTCCAACGAAAACAGCGAGTGATGTCTTATCAATGggttcatttttcagcagataTTGACACATCTAGCTTACGTAGGTATTGTTGCTATACAACGTTAATTCTATACATTTACAATTGTCCACTATCTGCGTACGTGTCCTCATAAACACACAAagacaaacacataaacacacaaacacacgtacGCAGGTAGTGAATAACGTTAACGTTAATTTGCTAATGGTGTGATATAATTGATATAACTGGTCTAGCTTtacgttctttttttttagccacGTGCTCAGCATTATCGTTATCGTGAGGTGTTTTCGTAGCCACGCCCACCTCCTATTCCTCCTACACCAATcacaacaaaccaaccaaccagaaaGCACTGTGTCGTGAACGAATGTACGTACGTCCGCGTCCGCATCGAATCATATCGATCACTACAGATTGCGATTATGATTGTGACCAATCACGACTGAATCCAGTGTAGTATGTGGAAGCCTCTGAAAACTGAAGATATATTTATGCTTTTCGTCTCCTTTCTGTTGAAGCACTGTCCTGTGtaacttaatgttttatttttgacgTTTATTTGCTATTTCGAAAGGAGTCGCGTCGGCGATTCGCGTCTCATATCTAGTTTGAATGAATTTCTTGAATATTTAAGCTGATTGTGAGGAATGCTGAAGAGGTTCGTCAGTAAAAACTCTTTCACTTTATTATTAGAACTCTATAGGAACCtaagtaattattaaatattatagttCTAAgcttgtattattattgtatgtTCTGATTATTGTAAGTTACACTatgaatttaaaacatttgccATGGCACAAATTTGTGCAGGACGGTTATTTCTGTAAAGATAACGAGATATATACTGTAGAGCGATGAGTAGGATTTTGTAAACTATACCAAAATGCACAACtctttacactgcaaaaaaaaaaaaaaattatttgaataagcaaaatcctcttaattatagtgtaaatatcaataaatatctcattttgagattattattattattactgttattattattattattatagtaactTATTTCTAACTTACCTGTACTTGTTTTAATGCATAATGCAGATAATTTTGCATAATTTTAACTTATAATGCAAATATACTGGATTTACATTGTTTAATGTGTATTACTGTGTATTATCAAAATAGAATACAAAATTTGTACTTGTTTTAAGAAATATGaataacatgaattaatgcagaattgtttgcttgtttaaaaTTCTGCAAACAgttttcatattaaaaaaaaaaaagtggaaatttattttaatagtttaaaaaaattctgaCAAAATTGATTGTTCTGGAAAATAATTAGCttgttttttaaagttcttaagaAAGAATGCTGAACATGTAGCCTATTTAAGAAATAATGCAGGTAATATTTGGTATTTCGATATATAATACAGAAAATCTACTGAAATGTTTAAGCATTGTATTAACATGTAGTTTTGTTTATCAAAACATTTCTTGAAACAAGCATTTCAAATTATCTGCCAATGAAATTAGAttgtttttagtaaataaaGTTGCATAAaacaagtaatagaagttaGAAATAAGCTAAATTAACTTACACAAGTTTGAAAGCAgtataatcaggaaaaaaggagacatttcagatatttaaaCTACATTTTGGAGGATTTAGCTTgttaatatcatttatttcagtgtatttattGAACGCTCTGTAATATACCGATCTCGCACCTGTAATCTGTACATGTTTACCCTTccactatatactgtatgtatcatTAACAGGAGAgaagtatatatttaaagctacacaaaacaaaaagcacaCCCCTCTGCATTACATTAACACCTACAGCAGTGCATAGGTCCCCACTTTGCACTGGTCCCTGTACTGTAGGTGTAAATAGAAGGCCTGGGTTTTTACAGTTTagcaacactacacacaaatgcacatgtatatgcatacacacacaaacacacacacacacacacacacacacacacacacacatctcctgAAGTATTAATGAAGTCATAAATCTACTGAAACCTGGAAACGCTTCAGTACCTGTCTCCCATACAGAGCTTTAAGAGAAGATTCAGTCATATCAGAGTTTAACCCAAAGCCATAACTCTAAATATGATTTCAATAAAACAatgcttctgtttctctttctgaaATTTCAGTGGTATGTCCTCTATATGAATGTAATGATTATTTCAACTCAATTCTGCAGATCACAAAATAAACTTCCCTTTTCTGTTGTCA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01294 CPE; carboxypeptidase E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248275 lncRNA upstream 58171 8702426 ~ 8742973 (+) True G183312
TU248249 lncRNA upstream 1301662 7480385 ~ 7499482 (+) True G183293
TU248239 lncRNA upstream 1342440 7433978 ~ 7458704 (+) True G183289
TU248188 lncRNA upstream 1384114 7411797 ~ 7417030 (+) True G183251
TU248185 lncRNA upstream 1403760 7394430 ~ 7397384 (+) True G183248
TU248385 lncRNA downstream 154441 9000855 ~ 9016526 (+) False G183361
TU248384 lncRNA downstream 167337 9013751 ~ 9027980 (+) False G183361
TU248387 lncRNA downstream 167337 9013751 ~ 9039749 (+) True G183361
TU248417 lncRNA downstream 334526 9180940 ~ 9187820 (+) True G183376
TU248418 lncRNA downstream 334526 9180940 ~ 9187820 (+) False G183376
XM_022681781.1 mRNA upstream 7237 8784880 ~ 8793907 (+) True msmo1
XM_022681779.1 mRNA upstream 22201 8752127 ~ 8778943 (+) True klhl2
XM_022681776.1 mRNA upstream 61281 8627354 ~ 8739863 (+) False LOC103036243
XM_022681783.1 mRNA downstream 24423 8870837 ~ 8983969 (+) True tll1
XM_022681786.1 mRNA downstream 243869 9090283 ~ 9184039 (+) True ugt8
XM_022681787.1 mRNA downstream 622160 9468574 ~ 9650975 (+) True LOC103047154
XM_022681790.1 mRNA downstream 992522 9838936 ~ 9844132 (+) False LOC111195202
XM_022681791.1 mRNA downstream 992522 9838936 ~ 9842445 (+) False LOC111195202
TU248136 other upstream 1584005 7214471 ~ 7217139 (+) True G183215
TU247941 other upstream 2136381 6658205 ~ 6664763 (+) False LOC103036850
TU247952 other upstream 2248764 6523345 ~ 6552380 (+) False LOC103036850
TU247933 other upstream 2302952 6493662 ~ 6498192 (+) False rnf38
TU247815 other upstream 2752670 6042688 ~ 6048474 (+) True G183001
TU248389 other downstream 24473 8870887 ~ 8912626 (+) False tll1
TU248439 other downstream 434290 9280704 ~ 9282934 (+) True G183387
XR_002651521.1 other downstream 992522 9838936 ~ 9844659 (+) True LOC111195202
XR_002651522.1 other downstream 992522 9838936 ~ 9844659 (+) False LOC111195202
TU248824 other downstream 1252167 10098581 ~ 10101547 (+) False LOC111195207

Expression Profile