RNA id: XM_022682129.1


Basic Information

Item Value
RNA id XM_022682129.1
length 1018
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC103028260
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 2566363 ~ 2661226 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGCGCGGACGCTTCTCTGCGGCGAGAGCATCTTCCATCATGGCGGCGAGCTGCAGGTTTGTGATGCTGGCGGCGCTGATAATGCTGCTGTTCCTGCAGCCCGGAGCCCCgcagaagaagaaagagaacATGCTGGTGGAGAAGGTAGAGCAAATGATGGAGTGGAGTTCCCGCCGCTCCGTGATCCGGATGAACGGAGATAAATTCCGGCGTTTTGTGAAAGCACCGCCCCGGAATTACTCTGTCATCGTCATGTTCACCGCGCTACAGCCGCAGAGACAGTGCTCTGTCTGcaggcagGCGAATGAGGAGTATCAGGTTCTGGCTAATTCTTGGCGCTACTCATCTGCTTtctccaacaaactcttctttACTGTCGTCGACTACGATGAGGGGGCCGATGTCTTTCAGCAGTTGAATATGAACTCCGCCCCCACCTTCATGCATTTCCCTGCTAAAGGGAAGCCTAAGAGGGCCGACACGTTCGACCTGCAGCGGATCGGCTTCGCCTCGGAACAGCTGGCCAAGTGGATCGCTGACCGAACTGATGTCCAGctccagtgcGTGGTGTTTGCGATGACCTCGGGTCAGATGTGGAACCACATTCGCGGTCCCCCCTACGCTCACAAAAACCCTCAAAACGGACAAGTGagtTATATCCACGGCAGCAGTCAGGCTCAGTTCGTGGCAGAATCCCACATCATCCTCCTGCTCAATGCTGCCATCACCATGGGGATGGTGCTGCTGAACGAGGCTGCCACCTCCAAAGGAGACGTGGGAAAGAGAAGAATTATCTGTCTGGTGGGCCTGGGCCTGGTGGTCTTCTTCTTTAGCTTCCTTTTGTCCATCTTCAGGTCCAAGTATCACGGCTACCCCTACAGCTTCCTCATCAAATAGAAGAATCCAAACCAAGATGATCATGGGAGATTCATTTTGGGagtttaaatttaacttaagtaaaacaaacagatgcgcccaaacacacacacacacacgttcattAAAGCCTGTATCTGAC

Function

GO: NA

KEGG:

id description
K12669 OST3, OST6; oligosaccharyltransferase complex subunit gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246801 lncRNA downstream 55244 2490408 ~ 2511119 (-) True G182273
TU246766 lncRNA downstream 443785 2113574 ~ 2122578 (-) True G182244
TU246759 lncRNA downstream 649338 1883042 ~ 1917025 (-) True G182237
TU246755 lncRNA downstream 742310 1823747 ~ 1824053 (-) True G182233
TU246750 lncRNA downstream 810321 1755836 ~ 1756042 (-) True G182228
TU246869 lncRNA upstream 130048 2791274 ~ 2799158 (-) True G182329
TU246973 lncRNA upstream 363949 3025175 ~ 3035507 (-) True G182404
XR_002651508.1 lncRNA upstream 507510 3168736 ~ 3190142 (-) True LOC111195174
TU246996 lncRNA upstream 569662 3230888 ~ 3268887 (-) True G182423
TU246995 lncRNA upstream 603916 3265142 ~ 3294956 (-) False G182423
XM_022681654.1 mRNA downstream 854226 1585495 ~ 1712137 (-) False LOC103021730
XM_022681657.1 mRNA downstream 856439 1585495 ~ 1709924 (-) False LOC103021730
XM_022681656.1 mRNA downstream 856439 1585495 ~ 1709924 (-) False LOC103021730
XM_022681655.1 mRNA downstream 856439 1585495 ~ 1709924 (-) False LOC103021730
XM_022681653.1 mRNA downstream 856439 1585495 ~ 1709924 (-) True LOC103021730
XM_007243336.3 mRNA upstream 486935 3148161 ~ 3157508 (-) False tlr3
XM_007243335.3 mRNA upstream 486935 3148161 ~ 3157507 (-) True tlr3
XM_007232798.3 mRNA upstream 640194 3301420 ~ 3306306 (-) True ankrd37
XM_007232796.3 mRNA upstream 676605 3337831 ~ 3341350 (-) True LOC103040979
XM_007232801.3 mRNA upstream 724339 3385565 ~ 3389256 (-) True helt
XR_002651506.1 other downstream 856439 1587252 ~ 1709924 (-) False LOC103021730
trnai-aau_12 other downstream 1038264 1528026 ~ 1528099 (-) True trnai-aau_12
TU246326 other downstream 2058349 494190 ~ 508014 (-) True cisd2
TU246325 other downstream 2058349 501353 ~ 508014 (-) False cisd2
TU246258 other downstream 2518148 45841 ~ 48215 (-) False LOC103026712
XR_002651509.1 other upstream 781340 3442566 ~ 3454586 (-) True LOC103039001
TU247085 other upstream 886407 3547633 ~ 3550413 (-) True G182501
TU247548 other upstream 2519297 5180523 ~ 5213151 (-) False G182810
TU247634 other upstream 2624762 5285988 ~ 5295716 (-) False LOC111195184
TU247875 other upstream 3450144 6111370 ~ 6113092 (-) True G183043

Expression Profile