RNA id: XR_002651546.1


Basic Information

Item Value
RNA id XR_002651546.1
length 743
lncRNA type inter_gene
GC content 0.44
exon number 5
gene id LOC111195230
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13982048 ~ 13997645 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCGGCGTTTTTCAAACTCGTAGAGACGGTTGGTGGCTGGTAGACCAAACAAAGCTAGGAGATATCCAGCTAAAACTGCGGTAAAGCAGCGGCGAAGTcagaaaaagtctgttttctgtgtgatgGGGAAAGATTGAACTTTGAACTTTGTGTACCTGTGGATTACGAGCCAAGCCCAGACGATTGAACCAGagTACAAAACCACTAGCCTCACACAGTGCTTCAGTAACAGCTTCTTCTCCTCCCTGATGTCAAATGCGCAGTGTTTCCAGACTAAGACACAGCaccaaatgtattatttatgGAAATAGAGACCTGAAGGGCAATTTTACCAGATTTATAGAGTCACAATGCTACCAAacattgcaaagaaaacaattggCTTCTGGAATAATCCTTTCTGGCTGCTGAAGTGCATAAAGGTTTGTAAATATTAAGTTTCACTCTGTTTAAGCCAACATTATAAAagagcagacacacacactgtttggggcacttttttttttttttttctttcttttttttttttaaactagggCGATTGTGCATTTTCCTCCCATTTCTTTCCACAAGGAACACCAAAGAGAACTCCAAAGAGACCTCCAAAGCACCAAATCTCAAGGCCAACTGCAGCTTGGGTGCCCCGAACTAGACAGGTTGACTCACAACTTCGCTTGCCGTCTCTCCGTTAGCCTGAGTGATCCACTCTGCGGAGCTGTGCTGGGGGGTTCTGCGACCTGACC

Function

GO:

id name namespace
GO:0000003 reproduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651544.1 lncRNA upstream 154347 13801357 ~ 13827701 (+) True LOC111195228
XR_002651545.1 lncRNA upstream 180906 13785878 ~ 13801142 (+) True LOC111195229
TU249730 lncRNA upstream 238597 13743028 ~ 13743451 (+) True G184285
TU249704 lncRNA upstream 252106 13724756 ~ 13729942 (+) True G184268
TU249611 lncRNA upstream 390974 13558816 ~ 13591074 (+) False G184203
XR_002651549.1 lncRNA downstream 2372 14000017 ~ 14000904 (+) True LOC111195231
TU249758 lncRNA downstream 32381 14030026 ~ 14040220 (+) True G184310
TU249752 lncRNA downstream 53142 14050787 ~ 14058747 (+) False c21h11orf68
TU249754 lncRNA downstream 53142 14050787 ~ 14053616 (+) True c21h11orf68
TU249765 lncRNA downstream 75525 14073170 ~ 14076179 (+) True G184314
XM_022681932.1 mRNA upstream 4970 13908175 ~ 13977078 (+) False pld5
XM_007230167.3 mRNA upstream 4970 13914881 ~ 13977078 (+) True pld5
XM_007230168.3 mRNA upstream 4970 13931409 ~ 13977078 (+) False pld5
XM_007230165.3 mRNA upstream 75979 13856969 ~ 13906069 (+) True LOC103029182
XM_007230161.3 mRNA upstream 76079 13856969 ~ 13905969 (+) False LOC103029182
XM_022681936.1 mRNA downstream 59213 14056858 ~ 14063300 (+) False c21h11orf68
XM_022681937.1 mRNA downstream 60623 14058268 ~ 14063300 (+) False c21h11orf68
XM_022681935.1 mRNA downstream 61063 14058708 ~ 14063300 (+) False c21h11orf68
XM_007230174.3 mRNA downstream 62458 14060103 ~ 14063300 (+) False c21h11orf68
XM_007230173.3 mRNA downstream 62475 14060120 ~ 14063300 (+) False c21h11orf68
XR_002651543.1 other upstream 292333 13660147 ~ 13689715 (+) False LOC103025917
TU249593 other upstream 436553 13535071 ~ 13545495 (+) False LOC111195141
TU249329 other upstream 2290112 11690901 ~ 11691936 (+) True G183996
XR_002651530.1 other upstream 2525675 11431984 ~ 11456373 (+) False clhc1
TU249184 other upstream 2550122 11429171 ~ 11431926 (+) True G183892
TU249755 other downstream 57672 14055317 ~ 14058747 (+) False c21h11orf68
TU250099 other downstream 1261731 15259376 ~ 15261534 (+) True G184594
TU250296 other downstream 2455695 16453340 ~ 16486424 (+) False G184727
TU250295 other downstream 2482963 16480608 ~ 16486424 (+) True G184727
TU250318 other downstream 2556364 16554009 ~ 16554312 (+) True G184741

Expression Profile