RNA id: TU254239


Basic Information

Item Value
RNA id TU254239
length 3469
lncRNA type read_through
GC content 0.36
exon number 3
gene id G187493
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5759517 ~ 5843830 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACATAAGAGCAGTTTTGAAGTACTGAAATTCACAAATTAACCTAGAACCATAGTGATTTAGAGACTTGTTTTGGGATCAAGGCCATCCAAGCTAAGAAGAACAAACATGTCGAGAGTAGGATCAAAAATGTGCCTCAGAAAATGACTAATTGCCAAAAAATGGCAATTAGTGAGCCCAAGGTGTTCTCCTTAAATCGTAGCTAGCATGTTCAAAGTGACCAGCAGCATAATCTGGAGTCGGACCATGATTAAGATTAGCAAACCCCTAAAAAGAAAGGGATATATCGATACATCAGAGACAGAACCATGCAGACCTTCACTGCTGGCCTGGCCCAGGCTGTATGGTTGGAGCTCTGTTTGAAAAAAAGCTCAGCATTCCTCACCAGCCGTGgccacatttacacactgttgAGGAGACCAGCAGTTATGAGCTTTTCACTGTCCGCTCTCGCGCAGGCAATTTCTCTCAAAACATTAGGGGACATTATTTATGGCCATGTTGACCGGTTAGTGGGGCTCCAACCTCCCCATTGCGGGGACTGGGGCTTTGGCTTCCATAaagaaaaatagttaaagatgGACTGTGGATAGCAAAACAAGAGAGGCCTACTTTCTAGGGAAAACTGCACACGTAATTAAGAACAGTCTGTTTTCTCATTCCTACAGTAATGTTGGAGTAAGAAAACAGATTCCAGGTTTTATTATTACTGAGAAAAAAAGTTTATGGCACAATCTCCAAATTAGTGTTTAAATATGGAGtcaaaaaatccttttttaccTTTAGTGTGATTTGTTTGGACATGTGAGAATATAGTAATCATACCTGAATATGGACAGAAATTACCACATTTAAATGCGGATAATCTCGGTTCAGTCCCAAACCAAGGATAAAGCTACGATAAAGGACACATCCACATGTAGTATCTAGATATTTTCTAAATTGTTGCCTTTGCTCTGTGTTTTGGCCTTTCAGCCAATTGAATATGGAGATTAATTTTACTGATCATAAGTGTAGATTTCCAAAATTatgcttttaatatttttgtgcaaaatacAACAGTTAACTGGCCAACTGGATACACAAGTCACATTTGGAAAAAtctacaattacttcatttctAATAGACTGTGTCTAATTTctgatttctattttttaaatagtttttttattatgataagTGAAGCTAGGTTTTGAGATTGATGGTTTTAACAccttaaggccaatttatacttctgagTCAAACCTCAGCCgtagctgtgattggtccactggGCTTTGTTTTCCCGCCCACACATTCCCACCTTCGCAGTTTAAACTGTAGAGCGACGCAGAACCGCTAATACGTGCATGTAGAAGTATAGACGTGCTTCCGCTGCGTAGCAAACTGTCATCGATACACATAATCTACAGCGTAAGTTTGACAAAGAAATATAAGTTTGCCTTAAGTTTGCTAGAAAACCTTATTGTGATTGCTCTGTATTTAGGTCTAATTTGGCTATTAGGCTTTTTTTGGAGTCATTTTTCACATAAAAACTATGTTAAATGCTAGCGCCACCTCCTGGGCTGGCATgttcttttaaacattttatgacTTTTAAGGAATAAAGAGAGATTTTTTGAGAAATGCTgcgaaaaatagagaaaaaaaccctatattttcaaatattttcaTAGCGGAAAGTGAATTGCCAAACTCTCGTCTCTAAAACGCAGATACATTAGTGTCACCTCTTGTATAGCAGCTCAATGAGCCATTTGTGTTACACTTCACTGGAAGGTTTTTTACATCTCTTGTTACTGTAttacacaacatgttaacacaTGGCATTTCAATACTAAACAAAGACTCAGCAAACACAAGCACTTAGTAGGTAATTGATATGTTGGGCATCATGATGGTAAATTCTATGGCTTCataaaactagtttttattGAATTACTAAGATAGGAAACAAGTTCCCGGTTTTATTACTAAAAAATGTATGTGGCACAATCTCCAAAGTACTTTATCCTTTCTTCATGGGTGTGAATATAGTAATCGTACCTGAGTACGGACCAAAATGACCACACTGAGACCATTAATAGATTGGTTAGTTTGTGTTGAGAATATGATCTGACTTTGATCCAACTAAACTATCAGGTGTAGTCCATTGCGTCTTCATATCTACAAAATTAGCAAGATGTAGAGGGAGTCCATATGTAAAGGGAACTATTGGCTATATACTTGGTTTTAAACAAAGGCCTTTTATAAAAGGCATATAAAAGTGTCTATATCCAAAATAATGCACAATATACTCTATTTGGAGCTTTACTATTGGTCCATTCCTCATGAAAAATGATTTCTAAAGTATTAGACATAATGGACGTAGCGTTTGTGGTAATCAGGGCTTCTATCAATATTCAGGAGAATCCTGTGAGTCGCAGTAGAGGTGGGATGTCTGTGGTGAAGGAAGAGAGGAAAGGCTGTCTGGGTGTTTATTTACCAGCACTTTGGAGTTTGTATCTCATATTTTCACAGTTATTacttacaatatacaaaaatcCTAACCTTATACTGCCACCTGCCACTATAAgataaaaaatgacattttatatatacagtatatattttgtagcattttagccatttttttacCCATCAACCCAAAAGGgacagtatttttgtattagGATCTAAAAtgaagttttgtttttaattccCCTTCCTATATTCACTTAAAAAGACATACAGTTTATTGTAAACATATTCATACTCCTTGAactgtttcacattttgtcactttacagctttaatgtattttacagagattttaagtgatagacaaacacagagtAGCACATAATTGAAGTGACGTGAAATGAAAACGATACATGGTTTATAAAatttgaatcaaataaaaatctaaaacaaagtGTGATGATTTACTCTGAAactcctaaaaaataaaaagtcactCAATTAGTTAATGGAGTCCAGCACTGTACAATTTAgtttcagtataaatacacctgttctgtgaaggcctcagtggttgtTAGAGATCaatagtgaacaaacagcatcatgaagaccaaggaactcctctaaccagacaggtcagagataaagttgtgtaGAGAtgtaaagcagggttaggttgaAGGTTATTTTACAACTGCAAATCTAAGAACTTAAAGAAGACCCAAATTGACAGATTGAGCAAAGAGAGCACTGGTCAAAGAAGCAGCCACAAGAAgcaggcccatggtcactctgaaggagctgcagaaatccatgCTCTTGGCTGAGTTTTAGTTATTTACAAAGATGTAAATAGATAGACCTGCAGCTgtaatacttttgcacatcacatttttcaaatgtttatttgatttaaatttttGTAAACCacgcactctaaaaaacagaggtacgatatgagtacttttttgtactcaaaggtactctcttcataattgtaccctcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254230 lncRNA upstream 11012 5701793 ~ 5748505 (+) False G187487
TU254226 lncRNA upstream 118461 5640822 ~ 5641056 (+) True G187484
TU254209 lncRNA upstream 257641 5499104 ~ 5501876 (+) True G187477
TU254207 lncRNA upstream 264103 5494470 ~ 5495414 (+) True G187475
TU254202 lncRNA upstream 268260 5490085 ~ 5491257 (+) True G187471
TU254361 lncRNA downstream 41972 5885802 ~ 5886002 (+) True G187583
TU254362 lncRNA downstream 45003 5888833 ~ 5899725 (+) True G187584
TU254390 lncRNA downstream 261362 6105192 ~ 6178630 (+) True G187610
TU254445 lncRNA downstream 457022 6300852 ~ 6302587 (+) True G187640
TU254446 lncRNA downstream 457381 6301211 ~ 6302749 (+) False G187640
XM_022682302.1 mRNA upstream 28173 5725343 ~ 5731344 (+) True wnt4
XM_007251419.3 mRNA upstream 241952 5508308 ~ 5517565 (+) False fbxo2
XM_022682301.1 mRNA upstream 241952 5508394 ~ 5517565 (+) False fbxo2
XM_022682300.1 mRNA upstream 241952 5511811 ~ 5517565 (+) True fbxo2
XM_022682298.1 mRNA upstream 273104 5472482 ~ 5486413 (+) True LOC103021734
XM_007251407.3 mRNA downstream 398197 6242027 ~ 6258457 (+) True LOC103043936
XM_022682305.1 mRNA downstream 432969 6276799 ~ 6288068 (+) True LOC103043630
XM_022682306.1 mRNA downstream 432969 6276799 ~ 6288068 (+) False LOC103043630
XM_007251405.3 mRNA downstream 447970 6291800 ~ 6298905 (+) True LOC103043323
XM_007251404.3 mRNA downstream 461964 6305794 ~ 6325915 (+) True elk4
trnae-cuc_2 other upstream 969470 4789976 ~ 4790047 (+) True trnae-cuc_2
XR_002651654.1 other upstream 1835855 3923452 ~ 3923662 (+) True LOC111195456
TU253515 other upstream 2364674 3392387 ~ 3394843 (+) True G186978
TU253378 other upstream 2757502 2980497 ~ 3002015 (+) True G186880
XR_002651586.1 other upstream 5221301 510575 ~ 538216 (+) True cers5
XR_002651591.1 other downstream 302855 6146685 ~ 6147519 (+) True LOC111195362
TU254736 other downstream 1248935 7092765 ~ 7098669 (+) False LOC103029365
trnaq-uug_4 other downstream 1348324 7192154 ~ 7192226 (+) True trnaq-uug_4
TU255026 other downstream 2268660 8112490 ~ 8113242 (+) False LOC111195452
XR_002651599.1 other downstream 2412968 8256798 ~ 8271689 (+) False agtrap

Expression Profile