RNA id: TU254361


Basic Information

Item Value
RNA id TU254361
length 201
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G187583
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5885802 ~ 5886002 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccagggtaatgtcagcataccaccaagaaggacgaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatctaaaaaacataaaaccacggctgatcaaatcacggcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254239 lncRNA upstream 41972 5759517 ~ 5843830 (+) True G187493
TU254245 lncRNA upstream 86823 5797180 ~ 5798979 (+) False p3h1
TU254229 lncRNA upstream 122311 5746898 ~ 5763491 (+) True G187487
TU254231 lncRNA upstream 122311 5752167 ~ 5763491 (+) False G187487
TU254230 lncRNA upstream 137297 5701793 ~ 5748505 (+) False G187487
TU254362 lncRNA downstream 2831 5888833 ~ 5899725 (+) True G187584
TU254390 lncRNA downstream 219190 6105192 ~ 6178630 (+) True G187610
TU254445 lncRNA downstream 414850 6300852 ~ 6302587 (+) True G187640
TU254446 lncRNA downstream 415209 6301211 ~ 6302749 (+) False G187640
TU254454 lncRNA downstream 416764 6302766 ~ 6304222 (+) True G187645
XM_007251410.3 mRNA upstream 50176 5817984 ~ 5835626 (+) False cldn19
XM_007251411.3 mRNA upstream 50176 5817986 ~ 5835626 (+) True cldn19
XM_022682303.1 mRNA upstream 87211 5779891 ~ 5798591 (+) True p3h1
XM_007251413.3 mRNA upstream 114505 5765449 ~ 5771297 (+) True ap5b1
XM_022682302.1 mRNA upstream 154458 5725343 ~ 5731344 (+) True wnt4
XM_007251407.3 mRNA downstream 356025 6242027 ~ 6258457 (+) True LOC103043936
XM_022682305.1 mRNA downstream 390797 6276799 ~ 6288068 (+) True LOC103043630
XM_022682306.1 mRNA downstream 390797 6276799 ~ 6288068 (+) False LOC103043630
XM_007251405.3 mRNA downstream 405798 6291800 ~ 6298905 (+) True LOC103043323
XM_007251404.3 mRNA downstream 419792 6305794 ~ 6325915 (+) True elk4
trnae-cuc_2 other upstream 1095755 4789976 ~ 4790047 (+) True trnae-cuc_2
XR_002651654.1 other upstream 1962140 3923452 ~ 3923662 (+) True LOC111195456
TU253515 other upstream 2490959 3392387 ~ 3394843 (+) True G186978
TU253378 other upstream 2883787 2980497 ~ 3002015 (+) True G186880
XR_002651586.1 other upstream 5347586 510575 ~ 538216 (+) True cers5
XR_002651591.1 other downstream 260683 6146685 ~ 6147519 (+) True LOC111195362
TU254736 other downstream 1206763 7092765 ~ 7098669 (+) False LOC103029365
trnaq-uug_4 other downstream 1306152 7192154 ~ 7192226 (+) True trnaq-uug_4
TU255026 other downstream 2226488 8112490 ~ 8113242 (+) False LOC111195452
XR_002651599.1 other downstream 2370796 8256798 ~ 8271689 (+) False agtrap

Expression Profile