RNA id: TU254640


Basic Information

Item Value
RNA id TU254640
length 4967
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G187766
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 6775168 ~ 6801448 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTATTTCCAGCAATTTTACAAGTACCTCTGTTGAGTCCCCTCTCGAGCAGCAGAGATGGAGCAGGTGGAGGGTAGAAGGAAAGCAGTGTGACAGCAGTCCAGAGGTCTGGATTACTCATTTATACATGTCAGTCAGGCCTCGACAGTGACAGGCACACATCACATAACCAGAACAGCAGAAGCCCTTTGTGAACCacagtaagatttttttaaacacaatggTTTTACTCCTGACTGTCTTAGGACTCACTTTTGAGCCTCACTTCTTAGTAGTTCTTACAACAGTTCAGTTTTTGCCTCTGTAGGGAAGAGGTCCATTCACTTGGAATCATGATAACAGTGATAAAGTGATAAAATGATAGTTCAGCAAAGAAACGCCACACTACTCCTGAAATATATTCTGGTGTGATATCAGTTCTTCTTTTCTAATGTTGAACCTTCAGTATTGAGTATGTGACAATAAATGTACACTTCTTTTTATAGGATTAAAACACTACACAGCCAGTGCTTCACTtatgttttttttccactatCCTGTGCACGTCTGCTTTGATGCTCATGTCAACATGTGGTATTGGAATGATGCCATCCATAATAACTAGTACATAAGTAGTTTTTgttgctatatttatttatttatatggctGTTTCTAACTATGTCACCTACTGTAAAACTTTGCCGGTTATCATTAAAAAGGCTGAAATCTACACAGATGGTTGTAGAGAATGATATAAAATCACCTTTTTGTGTAAGCTGTGTAAGCTATGTAGGTGTCATTTAGTGTTTtgaagaccccccccccccccccaggaaAGTGTGAAGAGTGTGTTCAGGAGTGTGTCTTACAGTATGTGACACCACATTATAATGGCCTTAGAGTGGGATATAAAAAATAGTCGAGTATCATGTGATAATTAGTGCTCTGTGATTAATTCATCTAAATTAATCACATTCATCTTAAAGAGTAACTATACTCTGaggcatttttacattaatcactaaaatatgttgctctgtaaaaatgtaacaacCAGCCCTtcataaaatgcttaaaaatgaggtgcaaatatattttgatgTTTAGATATACAAGCCCAAAATGGCAGATTAGTCATaatggctaatggctaactgGCAATGCGGTTAATTAATCGCTGATGTTTGATAACAGCTGGATGGCAccgtgctggttagattagtaggttctgtggTTTTATATGCAGATTATGGATACAGTTTACTCCAGTTTTTAGTTATTGACCTCAGAACACTAGAATACATCTCGActcaatgctagctaacagTCAAACTCATCAGTAGACTCTGGTGTTTTCAGGTTAAGCAGTAAAACAGTGCGATTCTTTGCCAAACTACCACTTTTATAGTTTAATGAAGTGAAGTAATGGCTCATCACTGACGTTTCTGCTCTTCTATGGAAATTCAGGCACAGATGATTCATAACCACATCTGCTGGCAGCAAAACAGCTCAGTTATGCCATTCTCATATCTTCTGATCTGTAAATCGattcaataatattaaaaacaacttgctgaattaaaaaaaaaacaaacaaaaaaaatgtataataaaaaggGGGTGAAGAAAGCAACTTGTTGAGCCATGCTGTTGTTAAGGCATACTATGTTCAGTGTACTACTGAACCAGTTTCAGTGTGAGGTTTTGTAGGATATTAGGCACCAACATCTGATATGTTTGTTaatcaaaaagaaacaaataaacaaacaaacaaaaatccaGAAACATTACAGTAAATACCTCTACTGGCccaatgcaaaagaaaaaaaaaagcaatgtgaAACAgaaagtgaataaaataataaacaacttCAGcatatttatagaataaatatattatatacacaatttGCTTTGTATGCATctctagaaataaataaacagagtatCCCATCTCCTGAAGAAGTATTCACAACCGAAAGGCTGTAACGGGACGATGGCGGCACGACTCACGCTTTAAGGCGCAAGTCGCACGAGTTGCACAAGTAAGACGTAAGAAGTTCAAGATGGTTGAATGCATCATGGTGGCACATTAAATAGACGCGTAATGAGCACATGCATGTAATCGACCGACAAAACAGAAGTAAGTTAGTATAAAGGGGGTTCTTTTCAGAAAAGTGACATCTTGTGGCACTGCAGTGTTGCACTGTTTGGTTGTGGTGATGGCCACAATTAATAAGGATAGCATAGTGGGATGAGTCAAATCCAgagataaaacaaagaaaataaaaattaatgagataatgaccaaaaaaaaaaaaaaaaaaaaggttttaacatCTACAGTATGTCCCAAGCTTTGCTTATTATTGGGGCTGGGAAGGAAGcgaagaaaagaaacaaacaaagcgaaggaaagaaaaagggaattttaagtcatttttaaaaatgttatgtgcCCTGCACAATCCATTTTGCTGGCCCCATTGTAGAACAAACAAAAGACGAACCCTTCTGCTACAGCAACTTGTGGTGGAACAGCAAGAACACACAGCCTCTACCATTCATAGAGTCGTTTTTTGGACTCAGACTGTGCATTTACACAATATATTTACCAATGATTAAACAAGTTAAAGGGTTTACTCTTCTAAAGCCTAGTACCAAAGTAAGATtcatattttcttcttttttttcaaacaagcTTTTAAGTACTTCCattagcattttcttttttttttttggaaaacaaaaaaactcatcacATCCAGCTTTAAGAAGAGCACTGGAGAATAAGTGCCCATATTGCAGTTATTCATGAtatcaaatcagatttggacCTAACCAATTAGGCCTGCTCAGAGAAAGCCATATTGGACAGCACTTCTAATCAGAAAGCACATTCCATGCAATGTTGCAGCGTTACAAaagtccaaaaaaataaaaaagaaacaaaaaatagcCCTTTTGCGTTAAGCTTCTTAGCAAAATTAATTGTAACAGTTTATTcttgttacaaaaaaaacagtttcagaCAGTGTGTCTCATAAAGCCCAGTGTTCTGATTTACATGCTCACAAGCAGTCAAAAAACCTGCACAGCAACATGTGCTGCGCAAGCTATATAGAGTAGCCTATGTCGTTGCTGTCTAAAGAACAACatgcatctccatttttgtttatttttagtttggtaCGCTTTTGACTGTAGCAGATATTCTTCactttgtgtcaaaatttcaatAGAAACAATTGAAATTCTCCAAGCTTCGCGTGGTTCAGCAGAGTAAATgcgtttttaaccttttttaatctgtttggtttgttttcacacaggcaaaaacATACACGCCCCAAAATGTGGCCCAACAAACTATGTGAGCATGCTGTTTCCTCTGAATGGTTAGAGTTGTCTGGCACGGGAGCAAGGAAGTAAATACATTATGAGGGTCCTGTGTTACAGACTAGCGCATATATTTGCGCAGTGCGACGCTGCTTTTACATTGAATGTGGAAAATTTTGCGCTGCGATTTCATTGATTTAAATGGCATGCGTGGTGCAGATGCTGCTCAGTAGGCAGATTTGCATGAGCAGCAAGTGCTACACATACAGCCTTCAGTGAGAAAACAGCTTAGCATGGAGAAGCAGCAGAGCTGGAATTAGTTAATAGCTGTAGTGATTTTATGGgcaataaatcagattaaactggacctgaacagccatttagcTCAAATATGAGTATATGAGATCcaaaatagtgctggtgtgaaaaacACCCTAAGGCACTGTCTATGATCTAAGGATTCCTGGTTTTGAATCCTGGATCATGTTGCATGTTGCTTGCCATTAGCAGTCGGAATCAGAGAGCACACAATTGGATCAGCACAGGCCTCTGTTAGCTGTTGTACTGTACTGGAACTGATGATCCAGCCATTTCCTCAGAGCTTGTTGACTGCCTAGCCATGCTGCTGGCATCACATGTGTCAGAGAAGGCATGTGCCAGACTTTACCCTCGTAGTGTTGAGGCATTACTAGTGAGTTCATATGAACAGGGATTGAGTAATTGTTCTACCAATttgggaagaaaatgagaaGGAGATAGAAATAAAGTTACTATTTTGGctatacatgtttttctttggacagcaaCTAAGTGTGAAAAGTGTGAAACCATACTCAACCAGTTCATTATCTGCTTGCGGACTTGGCTTCCTCAAAAAAGGGTCTAATTGATGTCCTTAATTAGTACACGTGTATTTCTGCTTGTACAGTATATGAACACTGCTACTACACCAGCTGTGCTACCTGTATTAGTGTCCCATTATTTTGACCCAACTGTACACAATGGATGGAAGCAATTTACGGCCAACCTCAGACGAGATGAAACTGTAAACGATAAATATGCAGTTCAGagaaaaactattatttaatgtttttttttttcaccaacaaAGTAAACACCTAAGAGATTCTTTTTGAACGGATTTGAGTGAGAAACAAAGTTCTTCTCTAAGTGGAGAAGAGCCTCAGGAGCTGACCCTGAAAGCTTAACTGTAAATGTCATCATGTGAATCACTGCATTCTGTATCATTCTCCATATGCTGCTGTAAAATATGTGTTCAGATCCGGCATGTAAGAGTTAATTAAAACTCTAATGACCTGCATGGACTTTCCTCGTCTTGTTTTGGTTTGCTTGTCTCTAGCCTGCACTGCTTTGCAGAGACATTCCAGtttctctacttttttttttttaaaaaacctctggCACAAGAGTGTATTCAGGTAATTTTCTGTGGTCCAGAAACTTCCATTAACTGCTTACTGTCAAGATTTAAGGTCTGAGTTAAGCTCAGAACTCTGACAcctttttgtttctcattttttatcACTTTACATAGAGCACTTAGTGATTGAGCATTCTGTGTGTGCTTTTTGCGGCTTGTGAACATTTCAagtcaacctttttttttttttgttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254634 lncRNA downstream 15266 6759507 ~ 6759902 (-) True G187764
TU254632 lncRNA downstream 16566 6758142 ~ 6758602 (-) True G187763
TU254612 lncRNA downstream 219291 6555315 ~ 6555877 (-) True G187745
TU254544 lncRNA downstream 254519 6520369 ~ 6520649 (-) True G187700
TU254527 lncRNA downstream 324918 6386926 ~ 6450250 (-) True G187685
TU254677 lncRNA upstream 83739 6885187 ~ 6886097 (-) True G187787
TU254687 lncRNA upstream 189516 6990964 ~ 6997859 (-) True G187794
XR_002651593.1 lncRNA upstream 304752 7106200 ~ 7130779 (-) False LOC111195364
XR_002651592.1 lncRNA upstream 304752 7106200 ~ 7121571 (-) True LOC111195364
TU254796 lncRNA upstream 351635 7153083 ~ 7155349 (-) True G187875
XM_022682308.1 mRNA downstream 272772 6395390 ~ 6502396 (-) True cdk18
XM_007251403.3 mRNA downstream 396404 6339628 ~ 6378764 (-) True LOC103042703
XM_022682304.1 mRNA downstream 698454 5917506 ~ 6076714 (-) True LOC103023821
XM_007251412.3 mRNA downstream 999023 5771810 ~ 5776145 (-) True c22h1orf50
XM_007251415.3 mRNA downstream 1011656 5749401 ~ 5763512 (-) False LOC103046070
XM_022682310.1 mRNA upstream 10960 6812408 ~ 6828711 (-) False LOC103022878
XM_022682309.1 mRNA upstream 10960 6812408 ~ 6828709 (-) True LOC103022878
XM_022682316.1 mRNA upstream 96543 6897991 ~ 6948954 (-) False sox13
XM_022682317.1 mRNA upstream 96543 6897991 ~ 6944188 (-) True sox13
XM_022682313.1 mRNA upstream 96543 6897991 ~ 6931357 (-) False sox13
XR_002651590.1 other downstream 1252248 5518793 ~ 5522920 (-) False svbp
TU253783 other downstream 2995514 3778014 ~ 3779654 (-) False LOC107197677
TU253769 other downstream 3000325 3765863 ~ 3774843 (-) True G187154
TU254659 other upstream 176203 6977651 ~ 6982840 (-) True LOC111195363
TU254656 other upstream 177247 6978695 ~ 6982840 (-) False LOC111195363
TU254662 other upstream 177247 6978695 ~ 6982782 (-) False LOC111195363
TU254657 other upstream 177376 6978824 ~ 6982840 (-) False LOC111195363
TU254880 other upstream 586949 7388397 ~ 7391026 (-) True G187946

Expression Profile