RNA id: XM_022682329.1


Basic Information

Item Value
RNA id XM_022682329.1
length 1215
RNA type mRNA
GC content 0.37
exon number 6
gene id pdrg1
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 7188616 ~ 7193252 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGACTGGGGGACTTATTTTGTATAATTACTCGCTGTGTGAggagctgtgctgctgctgctgtaggaGGGAGATGGACTCCAGCAGGGTGATGGAGTATCTGATGGAGGTAGAAGTGGCAGCTGAAGACGTGCTCGCTGATAAACAGCAGATTGTAGACCTTGACGCAAGAAGGAACAGAAATCGAGAAGCGATGAATGCCCGAAATAGTGCTGACAGTGATAAAGTAAAAGTCTGCTTTGGAAACATGTTCATAAAATTCCCCAAGGAGAATGCTCAAGCCATGATGCAGAAAGATCAGGAACAGCTTGACCAAGAGATAACTGACCTCAGGAAACGTCTAAAAGCGAAAGTAAATCATCTCAATGACTTACAAGGAAAGCCTGAACTCAGGGGCTACAACCTCTCTCCACTTAGCAATGATGAACTGAAAGCAGTTAATAGCATCCTGAAGAGATAGGATGACTCGAGACAATGGTGCAGTCCAGAGACTTGAATTTCAGGTGAAAACCTGATGCCAGACCCATGTTTAAACTTGAGTGTGCAATTAGGGGGAGTGTGGGGGAACATATGAAGTCAAGTGAACTCTAAAATCAAGCAGGAGGAAGATTTTTCTACAAACAGCATGAGGACATTTTGTTCAGATATgcaataatacacacacaagtgGACTACAGCGATACACCTATTGACACACATACTTATAAAATCTAGAGTtttgagtgtgttgagtgtgtaagtgttaagTTCGGCTAATgtgtgatttaaaaatataacatttttattgtaaatgtttaattaagtaAGATCTCTATTAAATAAGAAATTGTGCTTTCTAAATAAACTTTACCTTACCTTACTTCTTAAACCTTACTTCTCtttatacttttaaaacatctagagctgtattatttacatttattaaaacagataaaccaaaagtgatttaaaatatgaatcctggccaaacaataaacaaatttaaaagtTCAGTAACCGATCCAGAGAACTAGGGATGTCCCAATCACATTAGTTTGTCCCCTGAGCCGATGTCATTTaattttgagtatcttttgaTACCGAGTGCCCATCAATAGAAAAAAAGCAAGAACACATCCAAGTTGTcccttaaagttttttttcaatgATTATTGAAACAACAGTATCAAAATAGCccaagtatttttttctctcacaaaataaacttttaaatgtA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254803 lncRNA downstream 164 7188078 ~ 7188452 (-) True G187881
TU254802 lncRNA downstream 578 7187790 ~ 7188038 (-) True G187880
TU254800 lncRNA downstream 4563 7183826 ~ 7184053 (-) True G187878
TU254796 lncRNA downstream 33267 7153083 ~ 7155349 (-) True G187875
XR_002651593.1 lncRNA downstream 57837 7106200 ~ 7130779 (-) False LOC111195364
TU254859 lncRNA upstream 37870 7231122 ~ 7231844 (-) True G187928
TU254866 lncRNA upstream 156759 7350011 ~ 7353303 (-) True G187933
TU254862 lncRNA upstream 160995 7354247 ~ 7361214 (-) False G187931
TU254863 lncRNA upstream 160995 7354247 ~ 7361214 (-) True G187931
TU254864 lncRNA upstream 162237 7355489 ~ 7361214 (-) False G187931
XM_022682326.1 mRNA downstream 122530 7053226 ~ 7066086 (-) False hp1bp3
XM_007251389.3 mRNA downstream 123590 7053226 ~ 7065026 (-) False hp1bp3
XM_015606403.2 mRNA downstream 123873 7053226 ~ 7064743 (-) True hp1bp3
XM_022682324.1 mRNA downstream 138315 7036622 ~ 7050301 (-) False sh2d5
XM_022682325.1 mRNA downstream 138316 7036622 ~ 7050300 (-) False sh2d5
XM_022682330.1 mRNA upstream 3948 7197200 ~ 7205391 (-) True LOC103037403
XM_007251380.3 mRNA upstream 36221 7229473 ~ 7343221 (-) True LOC103036072
XM_007251378.3 mRNA upstream 183307 7376559 ~ 7378591 (-) False LOC103035242
XM_015606372.2 mRNA upstream 183307 7376559 ~ 7378477 (-) True LOC103035242
XM_007251376.3 mRNA upstream 216035 7409287 ~ 7419806 (-) True ghrh
TU254659 other downstream 205776 6977651 ~ 6982840 (-) True LOC111195363
TU254656 other downstream 205776 6978695 ~ 6982840 (-) False LOC111195363
TU254657 other downstream 205776 6978824 ~ 6982840 (-) False LOC111195363
TU254662 other downstream 205834 6978695 ~ 6982782 (-) False LOC111195363
XR_002651590.1 other downstream 1665696 5518793 ~ 5522920 (-) False svbp
TU254880 other upstream 195145 7388397 ~ 7391026 (-) True G187946
TU255454 other upstream 2758733 9951985 ~ 9954807 (-) False LOC111195437
TU256039 other upstream 3797565 10990817 ~ 10991394 (-) True G188898
TU256229 other upstream 4850661 12043913 ~ 12044293 (-) True G189055
TU256382 other upstream 5139293 12332545 ~ 12345382 (-) False mapkapk3

Expression Profile