RNA id: TU255248


Basic Information

Item Value
RNA id TU255248
length 359
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G188219
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 9125176 ~ 9125534 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcacggaggcactgctcggattacattataaacaggtcagttatcgcgctgctaacctcatgatgtttataactacggagtttagtggacacaccacggctgcaaggttagactgttgaaggctactgaagactattaaaggctattggaggttattgaaagggttattggagcagaaatcagtaaaggctggttagataagtgattcacctcctcgtcctttactgcggtgaaactgcgactagcgctgtcacagtgatgtttatttaacgtcattaaaactgattttgtcaggtattgtcttataaatatttacacagaacttatatctctcctaaaaagcgtttattttggtcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255241 lncRNA upstream 97317 9027548 ~ 9027859 (+) True G188213
TU255234 lncRNA upstream 104281 9020635 ~ 9020895 (+) True G188206
TU255208 lncRNA upstream 181554 8882968 ~ 8943622 (+) True G188188
TU255218 lncRNA upstream 194867 8929823 ~ 8930309 (+) True G188191
TU255205 lncRNA upstream 233409 8855506 ~ 8891767 (+) True G188186
TU255250 lncRNA downstream 10736 9136270 ~ 9136618 (+) True G188221
TU255251 lncRNA downstream 47856 9173390 ~ 9173660 (+) True G188222
XR_002651600.1 lncRNA downstream 627197 9752731 ~ 9754611 (+) True LOC111195368
TU255297 lncRNA downstream 627396 9752930 ~ 9754600 (+) False LOC111195368
TU255266 lncRNA downstream 639415 9764949 ~ 9795216 (+) True LOC103032765
XM_022682353.1 mRNA upstream 392051 8438713 ~ 8733125 (+) True LOC103024232
XM_022682351.1 mRNA upstream 392051 8446783 ~ 8733125 (+) False LOC103024232
XM_022682354.1 mRNA upstream 392051 8446783 ~ 8733125 (+) False LOC103024232
XM_022682355.1 mRNA upstream 392051 8464090 ~ 8733125 (+) False LOC103024232
XM_015601976.2 mRNA upstream 694114 8346072 ~ 8431062 (+) True LOC103046266
XM_007230591.3 mRNA downstream 158261 9283795 ~ 9819955 (+) False LOC103032765
XM_015607518.2 mRNA downstream 158261 9283795 ~ 9819955 (+) False LOC103032765
XM_007230592.3 mRNA downstream 710565 9836099 ~ 9839322 (+) True klhdc7a
XM_007243192.3 mRNA downstream 898458 10023992 ~ 10041141 (+) True dhrs3
XM_015604311.2 mRNA downstream 908477 10034011 ~ 10041141 (+) False dhrs3
XR_002651599.1 other upstream 853487 8256798 ~ 8271689 (+) False agtrap
TU255026 other upstream 1011934 8112490 ~ 8113242 (+) False LOC111195452
trnaq-uug_4 other upstream 1932950 7192154 ~ 7192226 (+) True trnaq-uug_4
TU254736 other upstream 2026507 7092765 ~ 7098669 (+) False LOC103029365
XR_002651591.1 other upstream 2977657 6146685 ~ 6147519 (+) True LOC111195362
TU255362 other downstream 728773 9854307 ~ 9856995 (+) True G188325
TU255566 other downstream 979082 10104616 ~ 10106300 (+) False LOC111195371
XR_002651602.1 other downstream 1051596 10177130 ~ 10180602 (+) True LOC111195373
XR_002651603.1 other downstream 1088825 10214359 ~ 10214948 (+) True LOC111195374
XR_002651604.1 other downstream 1095008 10220542 ~ 10221130 (+) True LOC111195375

Expression Profile