RNA id: XM_022682361.1


Basic Information

Item Value
RNA id XM_022682361.1
length 1875
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC111195371
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10101755 ~ 10106530 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGggtgagctgatgctggagttacagctagagcatgtttaaaacgtttaaaagctttaaaaatgtatgccCGCAATACTAAAACATCTGATATGGTTTTGTGTTGAGAAAATTAGAAGATATTAGAGGAGAAGAAATTCTcaagtgggtattctcctctctagagATTCTCTGCTTACAGTTCTTTGCTGCATCACATGACTACAGCTCCTCCTTTCAAGCTAAACGCGGGACGCGTTTCTGGACAGAAGCAAACTGAGGCTGTGGTAATAGTACGCAGGGTAAAATGACATTAATTCAAAGAGAAATTCTTGGATTATTAAGAGGCAGGGATAATCTTCGAAACAGATGTAAGATTGTGCGATGGATGCAGAAAAAATAATTCTGCCCAGAGCAATGAAATGCAACTCatgcaagaaaaaaatgaagttacACAAACGGTTCCAAGGAGATGGATATCAGTGGTGTTGCACAAGGAATGCACATCACCATACAGACATTACGGCTTCTGTCCGGAAGGGGTCTATGTTTTTTCGCTCCCGTTTATCTCTGCGACAACACTTAGAGTTCATCTATAGATTTTCTCAGGGcctgagacagagacagatggaGCTTATTGAGGATGGGATAGCTGGCAGTAGCAGAACTCTGACCAAAATGACATCAGCTTTGAGAAAAGTCTGCATTTCAGCGATGACAAAACTTCGACAGCGTGGAGGGATGCGTGTTGGGGGCCCACACCACTTTGTGATGATAGATGAGAGTAAATTCTCACACAAAAGAAAGTACAATCGTGGACGTGTAGGTTCTACCTGGCGACGGAGCAAAAAGTGGGTACTAGGAATTCTTGAAGTGGGCGTTACCACCCGGAAGCCCATACTGAAAATCGTCTCCAAGAGGTCGAGTGCACAGATGCTACCTGTTGTGAGACACTATGTGAGAAGAGGCACCAGTATCATTACTGATGAGTGGCGAGCGTACAGAGGTCTTTCAGATCTTGGATATGACCACCATACTGTTTGCCACAAGAGACATTTTGTACATCCACTCACTAGGGCTCACACCCAGCACCTGGAGAGGGCTTGGCAAAAATTCAAGGTTGATGTGTGGCGACACAGAGCAAACCGAAACACAAAACTCCTGAAACAGTACCTGAAGATTATAGAATGGGAACACTGGCTCGCCAAGAAGCACAAATGGGGTATACTGGGAAGACTGCTCCATGACattagaaaaatgtataaaagccATTCTTAATTAAATAGTCCAGAGGAGCATTCAGAATAGTGGATCTTAGCATCTGCAGTcattaaatgcaaaaatacataatctgtattaatatgttttaatattggcACATAGTTTGACAGTGTGTTCAaggatatttttaataatagagGCAAATATGTCCAGCTAATTTCCATCcatgtaatttaatattttggtcACGTACGTTATGGTTATGGCAATATATAAATAGTACTGAAATTCAGATTTACACTTTTCTGACTCTAAATCAATTActgataaaaacagaaaatgtaaaatattaatggTTTTGGGTTATATGTTTGTAAACTCGCATCTTTTTTGTATACATCCATTAAGTAGATTTGATGTAAAATGTATGCATTGTTAATAAATGCTACCCTGTTTAAAGTACAAACTAgtaattgtgtttttctgtttagacATTAATCATTATCGTGCTGTAAGGAAcatttatgaagctttataatttgttatatacCTTTGGTAATGTGGAAGAACTCATCACTTTACTTAAAGTCTGTAAAAAGTgcttatgaagctttataatttGTCATATGCCTTTGttaatgtggaataactcatCACTTTACTTAAAGTCTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255422 lncRNA upstream 35332 10065738 ~ 10066423 (+) True G188366
TU255391 lncRNA upstream 120186 9918929 ~ 9981569 (+) True G188349
TU255412 lncRNA upstream 130462 9964529 ~ 9971293 (+) True G188358
TU255411 lncRNA upstream 135280 9964529 ~ 9966475 (+) False G188358
TU255408 lncRNA upstream 145166 9953600 ~ 9956589 (+) True G188356
TU255614 lncRNA downstream 121967 10228497 ~ 10229131 (+) True G188527
TU255725 lncRNA downstream 194638 10301168 ~ 10301380 (+) True G188622
TU255726 lncRNA downstream 195915 10302445 ~ 10302703 (+) True G188623
TU255745 lncRNA downstream 200856 10307386 ~ 10311022 (+) True G188632
TU255744 lncRNA downstream 201789 10308319 ~ 10311022 (+) False G188632
XM_007243192.3 mRNA upstream 60614 10023992 ~ 10041141 (+) True dhrs3
XM_015604311.2 mRNA upstream 60614 10034011 ~ 10041141 (+) False dhrs3
XM_007230592.3 mRNA upstream 262433 9836099 ~ 9839322 (+) True klhdc7a
XM_007230591.3 mRNA upstream 281800 9283795 ~ 9819955 (+) False LOC103032765
XM_015607518.2 mRNA upstream 281800 9283795 ~ 9819955 (+) False LOC103032765
XM_007240551.3 mRNA downstream 13503 10120033 ~ 10132709 (+) False LOC103039471
XM_007240548.3 mRNA downstream 21665 10128195 ~ 10132709 (+) True LOC103039471
XM_022682365.1 mRNA downstream 21665 10128195 ~ 10131849 (+) False LOC103039471
XM_022682368.1 mRNA downstream 369409 10475939 ~ 10963809 (+) True LOC103026179
XM_022682367.1 mRNA downstream 369409 10475939 ~ 10963809 (+) False LOC103026179
TU255362 other upstream 244760 9854307 ~ 9856995 (+) True G188325
XR_002651599.1 other upstream 1830066 8256798 ~ 8271689 (+) False agtrap
TU255026 other upstream 1988513 8112490 ~ 8113242 (+) False LOC111195452
trnaq-uug_4 other upstream 2909529 7192154 ~ 7192226 (+) True trnaq-uug_4
TU254736 other upstream 3003086 7092765 ~ 7098669 (+) False LOC103029365
XR_002651602.1 other downstream 70600 10177130 ~ 10180602 (+) True LOC111195373
XR_002651603.1 other downstream 107829 10214359 ~ 10214948 (+) True LOC111195374
XR_002651604.1 other downstream 114012 10220542 ~ 10221130 (+) True LOC111195375
TU255727 other downstream 196830 10303360 ~ 10303665 (+) True G188624
TU255903 other downstream 741541 10848071 ~ 10852736 (+) True G188771

Expression Profile