RNA id: TU255726


Basic Information

Item Value
RNA id TU255726
length 259
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G188623
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10302445 ~ 10302703 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gggggggggttacatGACAGGAAGACAGAGAATAGGAAATTAAGAGGGGTACAATGGGaaaggagaggagaaaaaaacagcataccCCATACTGTGCTCCTAAGGAAGCACAGTATGGGACCATAAAAAAACCTCAGCACATATGCAATACACAGACAATAGACAGTTCTGGCAACATGTGGGTTAAGGGGTGGTAGAGATAGAGTCCAGTCCAGACAAGCAGCCATCCGGCAACCTGCCATTAATCCGGCGCGCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255725 lncRNA upstream 1065 10301168 ~ 10301380 (+) True G188622
TU255614 lncRNA upstream 73314 10228497 ~ 10229131 (+) True G188527
TU255560 lncRNA upstream 144989 10091209 ~ 10157456 (+) True G188478
TU255422 lncRNA upstream 236022 10065738 ~ 10066423 (+) True G188366
TU255412 lncRNA upstream 331152 9964529 ~ 9971293 (+) True G188358
TU255745 lncRNA downstream 4683 10307386 ~ 10311022 (+) True G188632
TU255744 lncRNA downstream 5616 10308319 ~ 10311022 (+) False G188632
TU255752 lncRNA downstream 20720 10323423 ~ 10323628 (+) True G188639
TU255754 lncRNA downstream 21018 10323721 ~ 10324107 (+) True G188641
TU255756 lncRNA downstream 21984 10324687 ~ 10325205 (+) True G188643
XM_007240551.3 mRNA upstream 169736 10120033 ~ 10132709 (+) False LOC103039471
XM_007240548.3 mRNA upstream 169736 10128195 ~ 10132709 (+) True LOC103039471
XM_022682365.1 mRNA upstream 170596 10128195 ~ 10131849 (+) False LOC103039471
XM_022682361.1 mRNA upstream 195915 10101755 ~ 10106530 (+) True LOC111195371
XM_007243192.3 mRNA upstream 261304 10023992 ~ 10041141 (+) True dhrs3
XM_022682368.1 mRNA downstream 173236 10475939 ~ 10963809 (+) True LOC103026179
XM_022682367.1 mRNA downstream 173236 10475939 ~ 10963809 (+) False LOC103026179
XM_022682369.1 mRNA downstream 435351 10738054 ~ 10739675 (+) True LOC103041410
XM_022682366.1 mRNA downstream 478966 10781669 ~ 10963809 (+) False LOC103026179
XM_022682370.1 mRNA downstream 694636 10997339 ~ 11070355 (+) True slc25a26
XR_002651604.1 other upstream 81315 10220542 ~ 10221130 (+) True LOC111195375
XR_002651603.1 other upstream 87497 10214359 ~ 10214948 (+) True LOC111195374
XR_002651602.1 other upstream 121843 10177130 ~ 10180602 (+) True LOC111195373
TU255566 other upstream 196145 10104616 ~ 10106300 (+) False LOC111195371
TU255362 other upstream 445450 9854307 ~ 9856995 (+) True G188325
TU255727 other downstream 657 10303360 ~ 10303665 (+) True G188624
TU255903 other downstream 545368 10848071 ~ 10852736 (+) True G188771
TU256068 other downstream 787025 11089728 ~ 11090047 (+) True G188923
TU256132 other downstream 1148676 11451379 ~ 11464480 (+) True G188968
TU256169 other downstream 1388183 11690886 ~ 12000653 (+) False fam19a1

Expression Profile