RNA id: TU256039


Basic Information

Item Value
RNA id TU256039
length 578
RNA type TUCP
GC content 0.42
exon number 1
gene id G188898
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10990817 ~ 10991394 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGACTCAAAGTCCTGCATCAATCCTCTGGAATCTTTGAACATGGACCACCCAGTTATCCAAGAACTACTAGCCTCAGACAGAGACCTCTACAGCCGGGGATTTTACATTCTCTATTGTTGGGTTCCTGGACATAGTGGCATTGGGGGCAATGAAAAAGCAGACATTTTAGCAAGGGAAGCAAGAAATCAGGACCTTTCTTGGAACTATGTCCCAATTACAGATGCCTACTATCTCGTCGAATTTCACTGTAGAAGAAAATGGCAAGATGAATGGTCCAGCAATCCACAAAATAAACTGTATGAAATATCACCAATCATTAATAGAAAATGCAATATGGACTTCCTTAATAGACAAGAACAGAGAATCATGACTAGGTGCCGAATTGGACATACTGCTCTTACCCACCGTCACCTCCTGGTTGGCGAACGGACTCCAGCCTGCCAGTTCTGTGATACTCCTCTAACAATTAAACATATCTTAGTAGACTGCCCTGCACTTTTAACCACCAGAAAGGACTTTTATAGGGTTACAAACGTGAAAGAACTGTTTGAAACGATTCCACCAGCTAGAATACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255974 lncRNA downstream 290937 10699614 ~ 10699880 (-) True G188838
TU255762 lncRNA downstream 657525 10333047 ~ 10333292 (-) True G188649
TU255757 lncRNA downstream 665819 10324521 ~ 10324998 (-) True G188644
TU255753 lncRNA downstream 667134 10323482 ~ 10323683 (-) True G188640
TU255746 lncRNA downstream 675245 10315341 ~ 10315572 (-) True G188633
TU256041 lncRNA upstream 1701 10993095 ~ 10993340 (-) True G188900
TU256082 lncRNA upstream 85184 11076578 ~ 11076888 (-) True G188936
TU256076 lncRNA upstream 85856 11077250 ~ 11078201 (-) True G188930
TU256075 lncRNA upstream 87063 11078457 ~ 11078571 (-) True G188929
TU256085 lncRNA upstream 164506 11155900 ~ 11156311 (-) True G188939
XM_022682819.1 mRNA downstream 130919 10834016 ~ 10859898 (-) True LOC111195430
XM_007240547.2 mRNA downstream 706903 10224975 ~ 10283914 (-) True lrrc38
XM_022682363.1 mRNA downstream 887924 10094323 ~ 10102893 (-) False LOC111195372
XM_022682362.1 mRNA downstream 887924 10094323 ~ 10102893 (-) False LOC111195372
XM_022682364.1 mRNA downstream 889160 10094323 ~ 10101657 (-) True LOC111195372
XM_022682371.1 mRNA upstream 88729 11080123 ~ 11155745 (-) True lrig1
XM_022682374.1 mRNA upstream 380863 11372257 ~ 11534415 (-) True suclg2
XM_022682858.1 mRNA upstream 1066138 12057532 ~ 12115859 (-) True fam19a4
XM_022682378.1 mRNA upstream 1171979 12163373 ~ 12178610 (-) False eogt
XM_007256427.3 mRNA upstream 1190725 12182119 ~ 12207582 (-) True tmf1
TU255454 other downstream 1036010 9951985 ~ 9954807 (-) False LOC111195437
TU254880 other downstream 3599791 7388397 ~ 7391026 (-) True G187946
TU254659 other downstream 4007977 6977651 ~ 6982840 (-) True LOC111195363
TU256229 other upstream 1052519 12043913 ~ 12044293 (-) True G189055
TU256382 other upstream 1341151 12332545 ~ 12345382 (-) False mapkapk3
TU256647 other upstream 1623518 12614912 ~ 12619566 (-) True G189335
XR_002651608.1 other upstream 2071541 13062935 ~ 13076516 (-) False tsen2
TU257791 other upstream 4327250 15318644 ~ 15322171 (-) False LOC103024926

Expression Profile