RNA id: TU256641


Basic Information

Item Value
RNA id TU256641
length 1999
lncRNA type read_through
GC content 0.36
exon number 2
gene id LOC111195455
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12612611 ~ 12714032 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttgatggatgtgttttgtgtttttgcagcgcttttcaatttgcactgcgttgggctttctcggccaccgtatatAAGAGTATTTAAGAACAAAAACCCTGTAAATGTGACTTTACTGAAACCATGTGCCACAAGGCACTGATTTTAAGATAAGCTAAGAACGTGTGAATGTTCCCCGGCTGGACTGGATTAGAGTAGAGTATTAAAGTACTGATGTAAAACTCCAGTTTTAGAGGGTGGTCATGTTTTGCTGTGGGCTACAGCACTTcctctactcttttttttcGAACACAGGAGATTCAATTACCAAGCTTTTTTGTAACTGAACTATTttagagaaaagaaaacatgcATCTGCGCTTCTGGGCCTTCTAGAACTGGAGTTTAATAGATGTTGGAACATCAGGGTTGATTTATGATTTACGTTAATAGAATGGTTGTGTGCAAAAGTTTAGATACTGGATTTTTTAGATAAAAACCTTCCACACTACAGAGCGTGGTCTGTATTCTGCTCTCTGTAAAGgatttttaattttgaatttttatgcacatacagtatatgtgagCAAGGGTTCTGAAACTTTTGTATAGAACTGTATATTAAAGGAGTATTCCAGTGTTTCTTAGCCTAATTTTAGTGTGCTGCATCTGTAAAGAATCCAATGGGCTCAATTCCACTTAtaactgtattgttttttacaAGAAAGAATTACTGGGAACTTGCCCGGATGCCCAGCATTGGTAAATTTACATTTCTGTTAGTACTGAACAGCGTATTAATGCTGCAAAACAAAGggtgttctgattggcctgttctctgcaaagaatCTGTAACTCACCCAATGAGTTTtaagtgtgggcgggcagtgtttttttccccttcttgatgggatgcgttcaggagcatcatggatCCCATTAAAACTTACAGtatttcacctctgactactaGTATATCcttgtctggtaaaagtaaaaaaaacaatatatatataatagcaaaaaaaagttctgttaTCCTTTGGTATCCTTTTCTTGGGGGAGTGGGGGACTGGGGGTCCAGGTCCGAAATACATTTTTGAACTTTGGGATGTCTGGTATAATGTCCAATGGCCTCTACCTCAAATGGTTAATGGTTTTTCGGGTCAGAAGTTTGTTGTAGTGGTTTCCACCTTTTTGCCACATCTACAGATAAGACTAGAGAGTAAGCTAAAGattaggtttaaaaatagaaaacactGGAATACTTCTTTAATCAGCTTTTGCCTAAATGAATGATTTTGATCTTTCTCGACCAATCCAGTAATGTTCAGCTGTAATTACGCCCCTGAAAAGTTGTCATAGATTACTGCTCGTACTTTTAGCTGAATAACTGGCAACACGTATGTTTTCAGTGTTATCTGTTAGGTTAGTCCTCCGTGGTCCATTGAAATAGCACTGGAATGAAGTTCAGCAGTTCATAATGTTAAAGAATATTAAACCTAATAAACAACTTTTCAGGGGGCGTATTACTTCGCCACACCAGTGTTCGTGGCTAAAAGGACACAGAACAGTGGGAGTAACTCAATTTACTCTGCAGTCTAAATCATTTTACTCCCACAGAGTGAGTTATTGGGAGAATATTGCAGCATTCTTGACTTTCTGAAGTTTTTAAACTTCAGTGCACTacagtgttgccatgttttactTCAGTAGTACGAATCGTAAATGTCATTGGGAGATTTTCGTTGTTCTTTAAGtgttgttaataaaaaaaaagtcccatGTTCTCTTTTGATGCACTAGTATAGCAGCAATGCAAGAACAAAAATACTATACTCcgtatttcttttcttttttgactTGAAATCTAAATCTTAGTGTCAGATTTGCAGAAAGTAGCTAATAATACGAcgaatgtgtttaaatgtgaattTTGGTGAATCAGTCAGTGATCTTcctgtaatatatgtaaataaactttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256661 lncRNA downstream 575 12649311 ~ 12651090 (-) True G189344
TU256642 lncRNA downstream 38502 12612631 ~ 12613163 (-) False LOC111195455
TU256610 lncRNA downstream 111053 12538250 ~ 12540612 (-) True G189319
TU256605 lncRNA downstream 118332 12529144 ~ 12533333 (-) True G189317
TU256606 lncRNA downstream 118332 12529464 ~ 12533333 (-) False G189317
TU256673 lncRNA upstream 53978 12768010 ~ 12768711 (-) True G189352
TU256699 lncRNA upstream 165913 12879945 ~ 12880344 (-) True G189376
TU256703 lncRNA upstream 176802 12890834 ~ 12891269 (-) True G189380
TU256704 lncRNA upstream 180831 12894863 ~ 12896608 (-) True G189381
TU256708 lncRNA upstream 188905 12902937 ~ 12903160 (-) True G189385
XM_022682860.1 mRNA downstream 37796 12612611 ~ 12613869 (-) False LOC111195455
XM_022682859.1 mRNA downstream 37805 12612611 ~ 12613860 (-) False LOC111195455
XM_022682392.1 mRNA downstream 39648 12594526 ~ 12612017 (-) True sypl2
XM_022682391.1 mRNA downstream 59572 12574219 ~ 12592093 (-) True atxn7l2
XM_007254541.3 mRNA downstream 78578 12566871 ~ 12573087 (-) True LOC103028365
XM_007254548.3 mRNA upstream 456 12714488 ~ 12756183 (-) True LOC103030591
XM_007254549.3 mRNA upstream 622 12714654 ~ 12756182 (-) False LOC103030591
XM_022682830.1 mRNA upstream 56703 12770735 ~ 12785185 (-) True LOC111195440
XM_022682395.1 mRNA upstream 106843 12820875 ~ 12854393 (-) False ippk
XM_022682394.1 mRNA upstream 106843 12820875 ~ 12854392 (-) True ippk
TU256647 other downstream 32099 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 306283 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 607372 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 1660271 10990817 ~ 10991394 (-) True G188898
TU255454 other downstream 2696858 9951985 ~ 9954807 (-) False LOC111195437
XR_002651608.1 other upstream 348903 13062935 ~ 13076516 (-) False tsen2
TU257791 other upstream 2604612 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 2717635 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 3688759 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 4119818 16833850 ~ 16869461 (-) False cass4

Expression Profile