RNA id: XM_022682463.1


Basic Information

Item Value
RNA id XM_022682463.1
length 4107
RNA type mRNA
GC content 0.46
exon number 10
gene id ptpdc1
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 16569623 ~ 16599317 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGATCCAAGCCAGCGATAGCTAAATGTGATAAACATGTATCGAGCTGCTGCTCTGTGTCGTGTTTTAACCAGCGGCTGGTGAAGCGGCGGATGTAAGCAGGTCCTGCCATGGCAGCAGGTGTCAGTCTACTGAGTGACCTGCCTTACTCCAGCGCCGgtagcagtggcagcagcagcggcagcagcagtgcAGCGAACAGAGGGCACTTCAGCATGGACATGGAGATAGTCGGAGTCCGGGTCCCCACGGCGAAGTACACTAAGATGGGTGAGACGCTGAGGCACGTTATCCCCGGGCACATGCAGTGCTCCATGGCCTGCGGAGGACGAGCCTGTAAATACGAAAACCCGTCACGCTGGAGCGACAAAGAACAAGCCATCAAGGGCCTGTACTCGTCCTGGATCACAGACAACTTGCTCGCCATGGCGAGGCCTTCAACAGAGATTATTGAGAAATACAACGTCATCGAGCAGTTTCTGGGGTGCGGCTTAAAGACCGTAATTAACCTCCAGCGGCCGGGAGAGCACGCCAGCTGTGGGTATCCTCTGGAGCCGGAGAGCGGATTCACCTACCGCCCCGAGGTCTTAATGGAGGCCGGCATCTATTTTTACAACTTTGGATGGAAGGACTACGGGGTAGCCTCTCTTACGACAATCCTCGATATGGTGAAGGTGATGTCTTTTGCCATGCAGGAGGGAAAAATGGCCGTCCACTGCCACGCTGGGCTCGGAAGAACAGGTGTTCTGCTGGCCTGTTACCTGGTCTTCACGTCCAGAATGAGTGCAGATCAGGCCATCTTATTCATCCGAGCCAAGCGCCCAAACTCCATCCAGACGCGAGGGCAGCTGCTGTGTGTCCGGGAGTTCGCCCAGTTCCTGGTGCCCCTGCGAAGCGTGTTCTCCAGTGCCGGACCCAAAGCTCACACTGTGACGCTCTCGCAGTTCCTGACTCGCCAGCGCCACCTGCTGCACGGCTACGAGGGGCGCCAGATGAAGAACGTGCCAAAGATCATCCACCTGGTCTGCAGGCTGCTGCTGGACATCGCGGAGAACCGGCAGACCGTGGAGGACGAAGCTCCGGAAATACCGGACCTCACGGCTGAAGTGGAGAAAACCGTATCCCAGCAGGCTTTGCAGCAGTTGGGGAAGGAGCTGCGAGGGAAAGGAATCCCGGTGTTGACCTCTCGCGCCTCGGAACCGCCGTCCTCCATCGTCCTCGGTCAGCGTCCTCAACTGGAAGACGCTCTGCTCTCCGTCCACCAGGAGTTCGAGCTCTTGTGGCAGCGCCAGAACCTCGATCAacaagctaacgctaatgctaatgctaattctaatgctaatgctaataaaccTCAGTTATTGCTCCACCACTGTGGCCTGAGCGCTAGTGACTCTGCTTTGCACACACTAGACTCCAGGTGGCAGCATTTCGCTTGGCCCCCAGTGCCTGTTTCCGATTTTTTGACCACTCGCTGTATGTCTCAGAGCAGATTAGCAGCAGAATCTCCAGACCTTCATTCCTCCAGACTTTTGCTGACGCCCGAAAGCTGCAGCAGCCCAAAACTGGACCTGGCCGGGTCCTTCTCCTCACTGGAAGAACCCAAGAAAGACCCGGAGCGAACGCCTCGCTCGCCGGCGTTCAGGAGACGAGTGCCGCTGAAGGAGACGAAGCGCAGCAGGTCTTTAGGGTTTTCGGGAAGCGGCAGCACTGTGTTCTCCGTGTGGCAGACGGACGAGAATACAAGAGACAATCAGACAAACGAAGGCGTTAAAACTCTCTTAAGATGTCCAGGAGATTCAACAGGGGACAGTGAGAGAACTGAGACAGTCAGCAACGCTCCCTTTATCACCCTGCAGACTGAACTCAGGCCTGAAGTCCGTCGAGTTCTGGTGGCGAAAGCTCTCGCCATGGATATCGAAGAGGAAGctcttaaaaacactgtgtcaGCGTGGCAGGCGGAGCTGAACTGTAGAGAGGGCGGCTGGGAGCGGCTGTGTTTAGAGAGGGATCCGCTGGTGCTCTCGGCTCTGATGTGGGCGTGGTTGGAGCAGCTGAAGGAACCCGTCCTCAATAATCAGGACATCCAGAAACTGACTGAGAACAGCCACGCCTCCCAGAGCGCTCTCAGCACCGTCGACAAGGGTCACAGACAGACGCTGCTCTGTATTCTGGACTGTGCTGCTCACCTGCTGAAACTGCCGGACGAGGTCGAATCCGCCGTCCTCAATCGAACAATCAAAGCTTTTACATGGGTTTCTGATGATTCAGAAGACGGACAGAAGATCTATAAAGCGCTTAAAGAAATTTTAACCCCAGTTTTGGGTGATTTAAGGAGTAAAGCAGAGGAGGAATGGGAATCTCCATAAAGCAGATCAGGCTCTTTAATCCCGCCCACGGGAAACACTCTGCACTAAAGCCTGAGTTATTTGGAGTTATTTACCATATTGAACGTTTTGTAAATGTTTCTCTGtgctcttttttattgttatatgtttaatgaatgttttaattgtgttttaacACGTTTACGATGCACTCATGAGTcgttttaactcattttaaccacagtctgttgttttatttgtgtttgttttatttaacactgccaTATGTACACGTACGCGTGCCAcaagtactgttttttttatttctcagcaTTATTTTTGATATCCTTTATATTCATGGTCTAACTGATAACTCTATTGATGAAGGTATATCTGGTTTATCTGTGGAGAGTTTGAGTATCATGTcatttcgtaaaaaaaaaaaagtacctcCTCTTTTCGACCAAATATTTTCACTGTGCAACATGTTGTGAtaaattgaatattttttatgctatttagACTATTTAAAAACGAAACAAAAAGCAGATTGTTAGAAttgtttaagaataaaaaaacactgagaaaaaacaaagaCCGATGCAAGGTTTGCTGTACAGGACGGGTCTTCTTAGGTTGGTTAGACGACAAATGTAAGGTATTTTTTCATAATGCAAAGACATTTCAATGTATTCCAACATGGCCTTGATGACAATACTGATATCTAAAGAGAAATCCCactgattttcatttttattttaaactaattcAGTTGTTGAGGTGGAAGGAAAGCGATTCAGagtgtttttatataaatttatgaCCATTCACATTGGATAAAGTATCAGCATAAATGCCTGGGATGGGAGTAGCTACTTGATTTATGTACTGTTACCACCTTCAaacaatgtaaaagaaaaacaacaatgcATGCATCTGCCaatttttggatttaaaaataaggaaaaatttCCGGCCTTCTCCTTTTTAGAAAGGAAAATTCGATGTCCCGTTTTTCTAGATAGGAATGCAGGAATGCgccttctctttctccttgcATCCATCCATGTCTCTGATTGGTTGTTCCAGTGTCGTTCACTGTGCACAGTGTTGTCGTCACTAACCTTGCGAGAACTGCCACTTATgacatttatttcagtttagatATGcacaggaatgttttttttttattctaatataatacgggaaattatATTTACAATTGAAAACTGAGATGGGAGTAGCTACTTGATTTACGTACTGTTGTCACCTCAAACTAAATTTATATCCCACttataataatcaataaataatgttttgttcTAAAATAGATGAGCTGTTGCTCTAGAATGAAACACTTcacaccaaaccaaaccatttaACATAATcaagtgtatttaaatgtatttaaacaacGTAGTTATGTAAAAATTAGTGGGATTTCTCTTTATTATGGTATCTTCTTTAGAGAATGTAGATGTTGGGAGGGTGAACTTCTCTCACTGAAAGCCCTCTGCCTCATTTCTGCGGCATTATTTGTGGTAAAGCTGctcttttgtaaaaataaataaataaagacgaAGTGACTGAAAGCACTGTAGCTGACtggaaaaacatgttttaaaacttctgaaaagtgtgtgagagaggacgTTCACACATGATGACGAAGCTCTGCAGCAGGGGATTGTTAAAGCGTCTACAACTGAATACTGTGCATTTAAAGGCAATTTTTATATCCTTTTATCCatgaaatatcaaataaatgttCATAAACTGTAA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K18078 PTPDC1; protein tyrosine phosphatase domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651610.1 lncRNA downstream 3618 16560501 ~ 16566005 (-) True LOC111195385
TU258158 lncRNA downstream 3997 16516334 ~ 16565626 (-) True G190420
TU258159 lncRNA downstream 3997 16526885 ~ 16565626 (-) False G190420
TU258160 lncRNA downstream 16411 16516760 ~ 16553212 (-) True G190421
TU258153 lncRNA downstream 84086 16456537 ~ 16485537 (-) True G190416
TU258170 lncRNA upstream 58904 16658221 ~ 16658494 (-) True G190430
TU258173 lncRNA upstream 86839 16686156 ~ 16686622 (-) True G190433
TU258174 lncRNA upstream 92512 16691829 ~ 16748387 (-) True G190434
TU258175 lncRNA upstream 106561 16705878 ~ 16722660 (-) True G190435
TU258189 lncRNA upstream 193563 16792880 ~ 16793587 (-) True G190444
XM_022682467.1 mRNA downstream 12865 16520544 ~ 16556758 (-) True wnt7a
XM_022682469.1 mRNA downstream 431330 15869135 ~ 16138293 (-) False LOC103029523
XM_022682468.1 mRNA downstream 431330 15869135 ~ 16138293 (-) True LOC103029523
XM_022682459.1 mRNA downstream 718432 15846861 ~ 15851191 (-) True LOC103030277
XM_007243528.2 mRNA downstream 735902 15832088 ~ 15833721 (-) True LOC103047460
XM_022682461.1 mRNA upstream 139970 16739287 ~ 16794230 (-) False phf2
XM_022682462.1 mRNA upstream 139970 16739287 ~ 16794230 (-) False phf2
XM_022682460.1 mRNA upstream 139970 16739287 ~ 16794230 (-) True phf2
XM_022682837.1 mRNA upstream 197551 16796868 ~ 16827437 (-) True fam120a
XM_022682470.1 mRNA upstream 234533 16833850 ~ 16869461 (-) True cass4
TU258141 other downstream 108695 16402791 ~ 16460928 (-) True G190405
TU257808 other downstream 1112358 15431667 ~ 15457265 (-) False LOC103026676
TU257791 other downstream 1247452 15318644 ~ 15322171 (-) False LOC103024926
XR_002651608.1 other downstream 3493107 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 3950057 12614912 ~ 12619566 (-) True G189335
XR_002651612.1 other upstream 234533 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 589348 17188665 ~ 17193747 (-) False irf6
TU258703 other upstream 618004 17217321 ~ 17219780 (-) True G190788
TU258917 other upstream 1540046 18139363 ~ 18213530 (-) False mrpl20
XR_002651616.1 other upstream 1568101 18167418 ~ 18175117 (-) False LOC111195395

Expression Profile