RNA id: TU258173


Basic Information

Item Value
RNA id TU258173
length 467
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G190433
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 16686156 ~ 16686622 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctacactctaagaaaagtaagtacagatttgtacttaaaagagtacaaagcttgtcgctggggctgtaccttatatcgaggtacaaaaaagtactttcagTGAagtcttttttgtacccatggtttttgtgtcagtaaagattataaatattataaacattatcatcaactaaatatgtgtcaaaaacttgatcatctaaaattgtctggctttcaaataaaaaaatgtgcaattcaaatatatattgtttattagtgcagtgatacagaatactgaatgtaccctttggctgcaggttaaatggtacaaatctgtacttattgctgttagaaatgactttgtacttcagagggaacaaatctgaccccgtaaagaccaatattgtacctttaaggGTACAATTACGAAGAGTGTACCCTTGAGtacaaaaagtactcatatcgtaccgctgttttttagagtgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258170 lncRNA downstream 27662 16658221 ~ 16658494 (-) True G190430
TU258166 lncRNA downstream 108511 16569628 ~ 16577645 (-) False ptpdc1
XR_002651610.1 lncRNA downstream 120151 16560501 ~ 16566005 (-) True LOC111195385
TU258158 lncRNA downstream 120530 16516334 ~ 16565626 (-) True G190420
TU258174 lncRNA upstream 5207 16691829 ~ 16748387 (-) True G190434
TU258175 lncRNA upstream 19256 16705878 ~ 16722660 (-) True G190435
TU258189 lncRNA upstream 106258 16792880 ~ 16793587 (-) True G190444
TU258192 lncRNA upstream 132179 16818801 ~ 16819610 (-) True G190446
TU258196 lncRNA upstream 151001 16837623 ~ 16944365 (-) False G190449
XM_022682463.1 mRNA downstream 86839 16569623 ~ 16599317 (-) True ptpdc1
XM_022682467.1 mRNA downstream 129398 16520544 ~ 16556758 (-) True wnt7a
XM_022682469.1 mRNA downstream 547863 15869135 ~ 16138293 (-) False LOC103029523
XM_022682468.1 mRNA downstream 547863 15869135 ~ 16138293 (-) True LOC103029523
XM_022682459.1 mRNA downstream 834965 15846861 ~ 15851191 (-) True LOC103030277
XM_022682461.1 mRNA upstream 52665 16739287 ~ 16794230 (-) False phf2
XM_022682462.1 mRNA upstream 52665 16739287 ~ 16794230 (-) False phf2
XM_022682460.1 mRNA upstream 52665 16739287 ~ 16794230 (-) True phf2
XM_022682837.1 mRNA upstream 110246 16796868 ~ 16827437 (-) True fam120a
XM_022682470.1 mRNA upstream 147228 16833850 ~ 16869461 (-) True cass4
TU258141 other downstream 225228 16402791 ~ 16460928 (-) True G190405
TU257808 other downstream 1228891 15431667 ~ 15457265 (-) False LOC103026676
TU257791 other downstream 1363985 15318644 ~ 15322171 (-) False LOC103024926
XR_002651608.1 other downstream 3609640 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 4066590 12614912 ~ 12619566 (-) True G189335
XR_002651612.1 other upstream 147228 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 502043 17188665 ~ 17193747 (-) False irf6
TU258703 other upstream 530699 17217321 ~ 17219780 (-) True G190788
TU258917 other upstream 1452741 18139363 ~ 18213530 (-) False mrpl20
XR_002651616.1 other upstream 1480796 18167418 ~ 18175117 (-) False LOC111195395

Expression Profile