RNA id: TU258703


Basic Information

Item Value
RNA id TU258703
length 2353
RNA type TUCP
GC content 0.52
exon number 2
gene id G190788
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17217321 ~ 17219780 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGCTTTGATACTCATATCCTGAGCTTTCTTCGCCACTTTGTTCTCCAGTTCCTTCATGTCCAGTCCTCGGGTCTGCATGGGCAGGGTGGCACTCTTGGGTTTAGCTGTAGATTTTAGAGGAAAACCAGCCGCCCCATCATCATCAGACAGAGGGGAGTTCCACTCGTCACTGTTGGGGTCCGCCTCCTTTACTGGAGCAAACTTGGAGTCCATTTCTAGCATCTTCTTTTGCAGGATGCTTAGCAGGGTGGCCTGGCTGGCCGAGACCGATGCGGGTGTCTGAGCTGGGGGTTGggttttgggttgagttggtGGTGGAGCTTGGGTTTGGGTTTTGGGTTGGACTGGGGGTGGAACTGGGATTTGAGCTTTGGGTTGAGTTGGTGGTGGAGCTTGGGTTTGGGTTTTGGGTTGGACTGGGGGTGGAGCTGGGATTTGGGCTTTGGGTTGAGTTGGTGGTGGAGCTTGGGTTTGGGTTTTGGGTTGGACTGGAGGTGGAAATGGGATTTGGGCTTTGGGTTTGGTtggtggaggagctggaggTTGGGTTGTTGGTGGAGCTGCAGGTTGGATAGTTGGTGCAGGTGGAAGTTGAGTTTTGAGTTGGGCTGGGGTTTGTGCTGGAAATTGGAATTTAGGTTGGACTGTTGGTTGAACTGgaagttgatttttggtttgggCCATTGGTACAGCTTGTGTTTGGGTCTGTGGTTGGACTGGTGGCTGTCCTGGAGGGGCTTTTGGTTTGCTTAGCACCACTTGTTTGAGTATGGGTTCAGTCCTGGTAACAGATGTAGGTGGTGGTGCTGTATAAGTGCTGGATAATTTGTCGTTTGGAGTAACAGAAGGGCCATTGATGAGCGGTTGAGCAACACTCTTTGCCGGTGGAGCAGGTGGCGGTGTGCTTGGTGGAACGTCATCTTCCGAATCAGAGTTAGCGAACTCAGGTGGAGGTGGGATGAAAGGAATGGCAGACTCATTGTCCTCTTGCTTCACAGGACTGATGGAAAGTACAGGTTGGGGGACTTGGGAAGGTTCTTGTTTGGGAATATTTGGGCTTTGGGGTTTGGGCTCTGCTGAGATGGCTTGTTTGGGCTCTGTGCGGAGAAGACTTTCTGAGGAAGCAGGAATTGGGGTGATGGTGAAGGAGTTGGGTTTGGTCTCATTAGGTTGGACGCTAACGTTCAGGGATTCAGCAGAGCTGTTGCTCTTGTTGCTGCTCTGTCTAGACAAGCCAGACCGGTGCTTGTCTCGGTTCTTGGCGGCCATTAGAAGGGCAAGTGGGGATGTAGAAGCTTCTTTCCCACTGGATCCCTCATGACCTCGCAAGGTTTGCAGCTTGTGGCTCAGTAACGGACTGTAGGAGCGTGTTCTGCTTGGAGATGCTGGCCGTTCATTGACTTGACTGATTTCTTGAACCGGTGGGATATTTTGAGACCGTTCTGTGTTGGGGGAACTTCTTACAGAGCTTTGGATCTTATTCGGGACTTCTTGCGGAATCGTCACTTTTGCAGGCTCGCCACTGATGGTTGATCCGGGCAATTCTGGCAAGTTCTTGTTCAAGTCTTCTACGTCTTTCTCTAGCTGGATGCCTGAGCTGTTTCGTCGCACTGGCTTGACTGGGGGTACCACATCTTGACCTGGACTGACCTCCTTTACTGAGGAAGAGGCCTTCCCATTGATGTGAACCCCAACTGGGTTCCCAGAAGTGTCCTCTAGCAGCAGGATCTGCTGGGTTCTTACCTCCTTGTCAGTTTGGTTGCTGAGCACTGTTGTTTTTGGCATGCTGTAGAGCTTGGCTGTGGTCTGAGGGTTGAAGCTGGAAGCTGGGGTTGCTGCGGGTGTAGGAGTTGGGGTAACTCAAAATTATAGATGGAGGACAGCCTCACAGGTTTTGGAGGCGGTGTCTTCTGGGCATTTCTGAGAAGTGGAGACTCTGGCTTCTCCATTGGAGGTAGTGGAGGAGTGAAGGTGGGGCATTCTGGGATGTCTTGGGCAGAAATTAAAGGGCTGGAGATGGGGACAGAGGACCTCAGGCTGGAGATATCGCTGGGAGGTTTTGGAGGAGCCATCGGTGGGGGCTTGATGAAGACTGGGTCCAGCTCCTCTGATGTTGTGGAGCCAGTTAGTGATGGTGGTTTGGGAGGAGGCATGGATGGTGGTTGCAGCGCTGCAAGATCTATAGATGGGTCCTTGTTCCCAAAGAATTCCTGTGGAGGAGGGATATATTGGGGTGATGGAGGGATGAActggggtggtggtggtggaggagccATAGAAGGTGGAGCAGGAATCAAGATCTGTCCTTCCTCAGGGTCTGCAATACTGATCATGCCTCCGTTTGGAAGTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258697 lncRNA downstream 62916 17153390 ~ 17154405 (-) True G190785
TU258698 lncRNA downstream 65482 17149468 ~ 17151839 (-) True G190786
TU258695 lncRNA downstream 86186 17125493 ~ 17131135 (-) True G190783
TU258660 lncRNA downstream 111653 17020911 ~ 17105668 (-) True G190758
XR_002651615.1 lncRNA upstream 16801 17236581 ~ 17238451 (-) True LOC111195391
TU258750 lncRNA upstream 30417 17250197 ~ 17251702 (-) True G190827
TU258737 lncRNA upstream 79164 17298944 ~ 17299699 (-) True G190816
TU258739 lncRNA upstream 194727 17414507 ~ 17415735 (-) True G190818
TU258734 lncRNA upstream 196179 17415959 ~ 17416966 (-) True G190813
XM_022682839.1 mRNA downstream 23702 17181114 ~ 17193619 (-) True irf6
XM_022682481.1 mRNA downstream 38508 17162816 ~ 17178813 (-) False LOC111195389
XM_022682480.1 mRNA downstream 38509 17162816 ~ 17178812 (-) False LOC111195389
XM_022682479.1 mRNA downstream 38509 17162816 ~ 17178812 (-) True LOC111195389
XM_022682478.1 mRNA downstream 58666 17131341 ~ 17158655 (-) True LOC103038379
XM_022682482.1 mRNA upstream 5898 17225678 ~ 17234938 (-) True wdr77
XM_022682485.1 mRNA upstream 47460 17267240 ~ 17285794 (-) False LOC111195392
XM_022682484.1 mRNA upstream 47460 17267240 ~ 17283889 (-) True LOC111195392
XM_022682487.1 mRNA upstream 89631 17309411 ~ 17336942 (-) True LOC103026358
XM_022682488.1 mRNA upstream 123220 17343000 ~ 17356073 (-) True LOC103036700
TU258706 other downstream 23574 17188665 ~ 17193747 (-) False irf6
XR_002651612.1 other downstream 347860 16833850 ~ 16869461 (-) False cass4
TU258141 other downstream 756393 16402791 ~ 16460928 (-) True G190405
TU257808 other downstream 1760056 15431667 ~ 15457265 (-) False LOC103026676
TU257791 other downstream 1895150 15318644 ~ 15322171 (-) False LOC103024926
TU258917 other upstream 919583 18139363 ~ 18213530 (-) False mrpl20
XR_002651616.1 other upstream 947638 18167418 ~ 18175117 (-) False LOC111195395
TU258958 other upstream 1091726 18311506 ~ 18315109 (-) False LOC103041510
TU259137 other upstream 1489250 18709030 ~ 18728796 (-) False LOC111195399
TU259141 other upstream 1491454 18711234 ~ 18763428 (-) False LOC111195399

Expression Profile