RNA id: XM_007256688.2


Basic Information

Item Value
RNA id XM_007256688.2
length 1801
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC103041510
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18311452 ~ 18315337 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGGAACTTGTTATAAGAAGAGTTCAGAGCTTAAATGAGTGTGTAAGTTTAGCTAAAAGTTTCACACCTAATTGCTCTCCTCAGTTCTGTTCTTCTGCTCTATTCGTAACCGTTTATTCTTGCAGAAATGTTGAGGTTTTGATGAATTTTCTCTTTAAACCCGCTGCACTGTGTGTAGAGTAGAGAGGGTATCCCCAGGGCACGCGGGCGCCACCAGGCGGGGGGAATAAGCAGCGCTCCGAGGCCCCGAAACTAAAAGTAGTCGGGACTGATTTAGCCGGAGTTACGGAGCTGAATTAAAGTAAGGATGGAGGATGAGGACGTGTCGGATAACTGGGAGGACGCGGCGGACAGCGGGGAGATTGAGAGACGACTGGAGGCGAAACTGAAGATCAGTCAAAAATCTAATAACCAAAGTTTGCCTGTTAAAACTGCGGTGGTGATTCAAGACGATTCGCTGCCTGCAGCCCCGCCTCCACAGATCCGGATCCTGAAGCGACCCCCCAGCAATGGCTCTCTGGGGCAGCAGGTGGCGTCGCGACCGGCGCAGCAGGTGAAGTCTCTGGCTCAGAGAGAGGCGGAGTACGCTGAGGCCCGAAAGAGGATTTTGGGGAGTGCTGAAGAACCATCTCAGGACAGGCCAGATGCAGACagacCCGCCATCACCAGTGCTCCTTCGGAATCTCTGCGGCCAAACAATCACATAATCCGCCAACCACTGGGGCCGGACGGCACCGCAGGCTTCCGCCTCAgcagatagaaagaaagaaagagagagagagggcgagagacatggaggtagagagagggtgaatgagcaagagagagaaagagatgaagatGCTATCTTGTGCAGAAGGGAGTTTTAACAGTATGGAGACAGACTTAACGTAGGTTTTGAGGAACAGAGGAGCATGAGCTTGCCTGCTTTGCTCCGAACCTCATCTcctttcctttttcttcttctttcctgCTGGATGTGCAGAGACAGCACCTCCGGGGAAGAAGGGATGAAGCCAAAGCGTCTCTCTGGCTGGGCCATGCTATGACAGggccatttctctctctgttttaggACTCTATACACTGTGCATTTCCTCAGTAACACTCCCCTTTGTCACGTTTTGGAGTTTGAGGCGCTCCAGGGTGGAGGGGATAGGTGTGATAAAGCCCCAGTCAGGAGTTGCTGCAGCTGAGAAAGCAGCAGTTTTAGCATTGTATTACAAACAGAAGACGCATTAGAATAAAGCCAGGGCTATTCTAATGAAGGCTGCGGGCATTGCTTTAAGCAAGTACACACGCCCGCTGTAATATGTGAGCTACAGTTGGCACGATATCACCTTTTTGTCTTTTCTGATACTGAAAACGTAAGTATTGTCTGATACTCAAGTGTATATTgaatgatatatttattttgtttaaaaagtgctaagatgtaaaatgaactttatatatttgtaaaatgtgCTCAAGCTGTACTATCCCACACTTTTTGTGGGTTACAGTGTGAAGTTATTATATGGTTACTGATATCACATAGCATACTATCTGACAGAACTGGATCTGAATTCCTGATCCAGAATTTTCTGCTGCTTTTGGCTGAATACCAGCGTGCCATCACTAATTTATACATGCTAGACATATAATATAGTTCTTACCATGATTAATACTAGTATTTTTCTGCTCCAAATCACCCGTAAAAACTACCTATTTGCAAGTTCAtctatttaaaggagaactctggtgtaaaattgacttttggtgtagtaaaacatgataaaaagtactttttttgttgaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258957 lncRNA downstream 63078 18240094 ~ 18248374 (-) True G190988
TU258924 lncRNA downstream 81790 18228990 ~ 18229662 (-) True G190958
TU258911 lncRNA downstream 93460 18193580 ~ 18217992 (-) True G190949
TU258952 lncRNA downstream 96357 18214748 ~ 18215095 (-) True G190983
TU258951 lncRNA downstream 120079 18189784 ~ 18191373 (-) True G190982
TU258971 lncRNA upstream 46744 18362081 ~ 18367210 (-) True G190997
TU258970 lncRNA upstream 51256 18366593 ~ 18367210 (-) False G190997
TU258978 lncRNA upstream 62303 18377640 ~ 18378194 (-) True G191003
TU259003 lncRNA upstream 187165 18502502 ~ 18505375 (-) True G191025
TU259155 lncRNA upstream 356126 18671463 ~ 18675406 (-) True G191078
XM_007256689.3 mRNA downstream 9220 18289441 ~ 18302232 (-) True necap2
XM_022682527.1 mRNA downstream 22707 18245810 ~ 18288745 (-) False crocc
XM_022682526.1 mRNA downstream 22707 18245810 ~ 18288745 (-) True crocc
XM_022682525.1 mRNA downstream 29301 18245810 ~ 18282151 (-) False crocc
XM_022682524.1 mRNA downstream 29301 18245810 ~ 18282151 (-) False crocc
XM_022682533.1 mRNA upstream 85886 18401223 ~ 18413418 (-) True LOC103030071
XM_007256680.3 mRNA upstream 101887 18417224 ~ 18428759 (-) False slc25a20
XM_015607725.2 mRNA upstream 101887 18417224 ~ 18428728 (-) True slc25a20
XM_022682534.1 mRNA upstream 119198 18434535 ~ 18450707 (-) True nckipsd
XM_007256677.3 mRNA upstream 141252 18456589 ~ 18467052 (-) True LOC103038600
TU258917 other downstream 97922 18139363 ~ 18213530 (-) False mrpl20
XR_002651616.1 other downstream 136335 18167418 ~ 18175117 (-) False LOC111195395
TU258703 other downstream 1091672 17217321 ~ 17219780 (-) True G190788
TU258706 other downstream 1117705 17188665 ~ 17193747 (-) False irf6
XR_002651612.1 other downstream 1441991 16833850 ~ 16869461 (-) False cass4
TU259137 other upstream 393693 18709030 ~ 18728796 (-) False LOC111195399
TU259141 other upstream 395897 18711234 ~ 18763428 (-) False LOC111195399
TU259248 other upstream 582172 18897509 ~ 18902257 (-) True LOC103032794
XR_002651627.1 other upstream 3192715 21508052 ~ 21508261 (-) True LOC111195406
XR_002651626.1 other upstream 3195587 21510924 ~ 21544831 (-) False elmo2

Expression Profile