RNA id: TU258978


Basic Information

Item Value
RNA id TU258978
length 485
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G191003
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18377640 ~ 18378194 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tattacattttaatcacataaacaaaaaaaaacatataacaaCAAACATATTTGGTTCAATAATGAATAAACATCTTTGGTGTACTGAATTTTGGTGCATGTATTTCAAGAGCAGTGCAAAATATAAGAGTACAATATCAGATATGTTTCATATATGTGTCGGTACATCGTTGATAAATGTGGTGAAATTAAAAGTAAGAGCTTTTACCAAAAAATGTGGAtataaaaataaggtaaaaaaaaaatattttttactgttgttttttccccagttttgcattgtttgattATACAATCTTTATCCCAGTAATGGTtaaagcagccaGATCTGTTGGGGATTGGTGGAGCTGTGGTGCCGGAGTTCAGAGTTGGGTTCAGAGCTGGGCCGTCTGGATCAGAGACAGGTGGCAGGGTTTACACAGGATCTGCCCGTCCAGCGGGTGGCAGCCTTGTTCATTCGGCTCTGGAGAGAGAAGCACCCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258971 lncRNA downstream 10430 18362081 ~ 18367210 (-) True G190997
TU258970 lncRNA downstream 10430 18366593 ~ 18367210 (-) False G190997
TU258962 lncRNA downstream 16885 18310476 ~ 18360755 (-) True G190990
TU258957 lncRNA downstream 129266 18240094 ~ 18248374 (-) True G190988
TU258924 lncRNA downstream 147978 18228990 ~ 18229662 (-) True G190958
TU259003 lncRNA upstream 124308 18502502 ~ 18505375 (-) True G191025
TU259155 lncRNA upstream 293269 18671463 ~ 18675406 (-) True G191078
TU259169 lncRNA upstream 325211 18703405 ~ 18706063 (-) True LOC111195398
XR_002651618.1 lncRNA upstream 325217 18703411 ~ 18706020 (-) False LOC111195398
TU259175 lncRNA upstream 326970 18705164 ~ 18721914 (-) False LOC111195398
XM_007256688.2 mRNA downstream 62303 18311452 ~ 18315337 (-) True LOC103041510
XM_007256689.3 mRNA downstream 75408 18289441 ~ 18302232 (-) True necap2
XM_022682526.1 mRNA downstream 88895 18245810 ~ 18288745 (-) True crocc
XM_022682533.1 mRNA upstream 23029 18401223 ~ 18413418 (-) True LOC103030071
XM_007256680.3 mRNA upstream 39030 18417224 ~ 18428759 (-) False slc25a20
XM_015607725.2 mRNA upstream 39030 18417224 ~ 18428728 (-) True slc25a20
XM_022682534.1 mRNA upstream 56341 18434535 ~ 18450707 (-) True nckipsd
XM_007256677.3 mRNA upstream 78395 18456589 ~ 18467052 (-) True LOC103038600
TU258958 other downstream 62531 18311506 ~ 18315109 (-) False LOC103041510
TU258917 other downstream 164110 18139363 ~ 18213530 (-) False mrpl20
XR_002651616.1 other downstream 202523 18167418 ~ 18175117 (-) False LOC111195395
TU258703 other downstream 1157860 17217321 ~ 17219780 (-) True G190788
TU258706 other downstream 1183893 17188665 ~ 17193747 (-) False irf6
TU259137 other upstream 330836 18709030 ~ 18728796 (-) False LOC111195399
TU259141 other upstream 333040 18711234 ~ 18763428 (-) False LOC111195399
TU259248 other upstream 519315 18897509 ~ 18902257 (-) True LOC103032794
XR_002651627.1 other upstream 3129858 21508052 ~ 21508261 (-) True LOC111195406
XR_002651626.1 other upstream 3132730 21510924 ~ 21544831 (-) False elmo2