RNA id: TU259115


Basic Information

Item Value
RNA id TU259115
length 2415
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id LOC111195399
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18708319 ~ 18798915 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAGAGTGCAGCAGTGCCACACGCTCACTTGCATCCACCAGCTCCTGTTCAGCCACTTTGCggcctctctctgtctgatcCAGAGCAGATCTCAGCTCCTCAATCTCAGCCAGCATCAGATTATTCCTGCGCTCCACCATGGCTACCTGCTCCTTCATGTCTTCCTGTCCTCTGACAGCATCGTCAAGGTGCAGTTGAGCATCCTGACATAAAATTAATAGAGTTCATTAATTGTTTCAACCAGCATACATTAGAAAATCAAtatagaaacagaaaaaagcaaTCTGCTCACCTTCAGCTGTCCTTGGACGTTCCTGAGCTGTTTCTGAGCTTCAGCAGCCTGTCGGTTTGCATGGCTCAGCTGAACCTCCATCTCATTGAGATCTCCCTCCATTTTCTTCTTAACTCTGAGGGCATCATTTCTGCTCCTGACCTCTGAGTCCAGAGTGCTCTGCATGGACTCAATAACCCTCTGGCTGTTCCTCTTGATCTGCTCCATCTCCTCGTCCTTCTCAGCCAACTTCCTGTCAATCTCACTCTTTACCTGGTTGAGTTCAAGCTGGACACGGAGGATCTTGGACTCCTCATGTTCAAGTGTGccctaaaaagatttgttgcACATTAGTAAAATAGTTACACACTCAACTCTGTGTTTAAATGTAAGTTAATTCAGGCATAGCATCACCTCGGCTTCCTCAAGAGCAGTCTGGATTTCTGATTTCTCAGTCTCCACTGTCTTCTTTGCTTTCTCCAGCTCATGAATGGACTTTCCAGTCTCACCGATCTGTTCAGTCAGGTCAGAGATCTCCTGTAgattcttgttctctctcttgaGTGTCTCGAGCTGATCAAGAGCTTCTTCATATGAGTTCTTCATCTTAAAGAGTTCAGTGCTGAGAGAGCGAGCCTCTTTCTGAGCTCCTTCCAGTTCAGCCTGGCCTTCCTCATACTTCTGCTTCCATTCTGCCAATACCTGAAAATGTAGAATAAATGCTTAGTTGGTCATGGCCTGTTTAGCATTATATGACATCTGTTTCAAGCATCAGTTTCTATCTATACCTTATCAaagtttctttgctttttgtCAAGGTTGGCAGCTAATGCATTGGCTCTCTCAACATCAATCATGAGGTCCTCCACTTCACCCTGCAGCCTCTGTTTGGTCTTCTCCAGAGAAGCACACTTAGAGTTCACAGCTTCAATAGATTCCTCAGCCTCTTGAAGACGCTGAGCCAGCTTTCTTGGACTCCTCGAGCTCCTCAGTGCGCTGAATAGCATCCGTCTCATATTTGGTTCTCCACTGAGCCACCTCACTGTTAGCCTTAGACATTCCACGCTGAAGCTCTCCTTTGGCCTCCTGTTCCTCTTCAAACTGCTCTCTGAGCAGGTCACAGTCATGACGAGCTGACTGAACACCATGAGCCAGGGCGTTCTTGGCCTTGAAGTGGGGGAAAGGTTAAATCCTTTTAGATTGGCTGCCACTTTAATGTTAAAAGTTGCATCTAAAGTTATACCCAGAGCTACATTAAATAGTACCTTGACTTCCTCTTCAATTTGTCTCTTAAGTTCCTCAATCTGTTGTGTATAGGCTTGTTTTCCTCTGGACAGCTGAGACACAAGTGCCTCCTTCTCTTCCAGCTGACGACCAAATTCACCTTGGgaaatatatttgattaaaaaagtgtaatattttttttacctgtttaatTTGCTTAAATTGTTTACTTACCATTCTCAGTCTGGAAGTCGTGTCTTTGTGCACTCAGATCGTTCAGTTGACGGACATGTTCATCACTTTTAGCTTTGATTTCACTCAGCTGGTCCTCAAGCGTACGACACATCTTCTCTAGATTTGCCTTTGCCTTAGCCACAGCCTCCATGTTACTGGACAGGTCATCTATCTCCATCTTATATtcactcttctctttctccagcTTCTGTTTGACCCTCTGAAGGTTGTCGATCTGCTCTCCAAGCTCAGCAACACTGTCAGCTTGTTTCTTGCggagagcagcagctgtagcTTCATGCTGCAGAGTAGATTCTTCTAGATCACGACGCAGCTTCTGAAACTCAGCCTCACGCTTCTTATTCATCTCAATCTGAGCAGCAGTGGCACCACCAGCCTCCTCCAGCCTCTCACTGATCTCTTCAAGTTCCCTGGAGAGATCAGCTCTCTGCTTCTCAACTTTAGCTCGAGCTGCACGCTCTGCCTCAATTTCCTCTTCCAGCTCCTCAATACGAGCCTGAAACAAATGTAGATATAAGACAGATCTTCTTCTTTAAATTTatcaaatgtataatatatacagaGATAATTTACCTGGAGCTCCTTAATCTTCTTCTGAAGCTGAGCACCCAAAGACTGTTCATCCTCAATCTTACTCAGAAGTTGACTGATTTCAAAGTCCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259169 lncRNA downstream 5171 18703405 ~ 18706063 (-) True LOC111195398
XR_002651618.1 lncRNA downstream 5214 18703411 ~ 18706020 (-) False LOC111195398
TU259155 lncRNA downstream 35828 18671463 ~ 18675406 (-) True G191078
TU259003 lncRNA downstream 205859 18502502 ~ 18505375 (-) True G191025
TU258978 lncRNA downstream 333040 18377640 ~ 18378194 (-) True G191003
TU259156 lncRNA upstream 369 18732558 ~ 18752026 (-) True G191079
TU259151 lncRNA upstream 16774 18748963 ~ 18778171 (-) False G191074
TU259149 lncRNA upstream 17850 18750039 ~ 18798915 (-) False LOC111195399
TU259135 lncRNA upstream 26804 18758993 ~ 18774317 (-) False LOC111195399
TU259150 lncRNA upstream 30777 18762966 ~ 18778171 (-) True G191074
XM_007256676.3 mRNA downstream 219786 18488677 ~ 18491448 (-) True LOC103038294
XM_022682536.1 mRNA downstream 222657 18483415 ~ 18488577 (-) True LOC103029431
XM_007256677.3 mRNA downstream 244182 18456589 ~ 18467052 (-) True LOC103038600
XM_022682534.1 mRNA downstream 260527 18434535 ~ 18450707 (-) True nckipsd
XM_015607725.2 mRNA downstream 282506 18417224 ~ 18428728 (-) True slc25a20
XM_007234443.3 mRNA upstream 67740 18799929 ~ 18844551 (-) True cacna2d2
XM_022682542.1 mRNA upstream 67740 18799929 ~ 18836162 (-) False cacna2d2
XM_007234445.3 mRNA upstream 117711 18849900 ~ 18861224 (-) True acy1
XM_022682543.1 mRNA upstream 117711 18849900 ~ 18861099 (-) False acy1
XM_007234444.3 mRNA upstream 130376 18862565 ~ 18870053 (-) True abhd14a
TU258958 other downstream 396125 18311506 ~ 18315109 (-) False LOC103041510
TU258917 other downstream 497704 18139363 ~ 18213530 (-) False mrpl20
XR_002651616.1 other downstream 536117 18167418 ~ 18175117 (-) False LOC111195395
TU258703 other downstream 1491454 17217321 ~ 17219780 (-) True G190788
TU258706 other downstream 1517487 17188665 ~ 17193747 (-) False irf6
TU259248 other upstream 165320 18897509 ~ 18902257 (-) True LOC103032794
XR_002651627.1 other upstream 2775863 21508052 ~ 21508261 (-) True LOC111195406
XR_002651626.1 other upstream 2778735 21510924 ~ 21544831 (-) False elmo2
TU260340 other upstream 3114780 21846969 ~ 21851642 (-) False G191862
TU260341 other upstream 3114780 21846969 ~ 21851642 (-) True G191862

Expression Profile