RNA id: TU259149


Basic Information

Item Value
RNA id TU259149
length 1745
lncRNA type inter_gene
GC content 0.47
exon number 8
gene id LOC111195399
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18708319 ~ 18798915 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atataacatacataatagaaagaaatagaaaaatattcataggagagagagagagagaataaggatAAGTGAGCTACAGTCGCTTCAGTGGTTTTGTAACCTGCTCGCGCTTCCCGCCAAAAGTGCCGCTAGAGGGCGCGAGGGCTGCATCAGTGTCATTCTGAGGTAAAAACTGAGCTCGTTAGCCACTTGCTAAACCGTTTTGCCTTAAATATTACTAAAAGTTGAACAGAAACGATGGAAAAAaTCAGTAAAGGTTTCCTTATGTAAGGAACCGAACCCCTGCTCCAGATGGGTGAAACCAGCACAGCCATTTGAATAGAGTCGCTGgtctgttcacacagacaattctagccagatgctggtcatgatcattaccacccactgcactggcCACGCTTCACGGCTCTTGGCTCTCAGCTTGTTGACCTGGGACTCAGCGATGTCAGCACGCTCCTGAGCTTCCTCCAGCTCATGCTGCACCTTCCTGTACCTGGAGAGTTTTTGTCTGTCACGCCTTGGTCCCCAGTAGTGTCAGACTCCTGCTGCACCTGGCCAGCATCACGGCTCTTGGCTCTCAGCTTGTTGACCTGGGACTCAGCGATGTCAGCACGCTCCTGAGCTTCCTCCATCTCATGCTGCACCTTCCTGTACCTGGACAGGCTGACCTACCCGAGACTCAAGTTTCTGAAGCTGCTTCTTTCCACCTTTCATGGCAAGATTCTCAGCCTCATCCAGACGATGCTGCAGATCTTTGACTGTAACCTCAAGGTTCTTCTTCATTCTCTCCAGGTGAGCACTGGTGTCCTGTTCTTTTTTCAGCTCCTCTGCCATCATAGCAGCCTAGAGAATGAGCCATGTAATGGGTTTAGCTTTGTTACTCTGAAGCACAAAGGGAGGAACAGCTATGTAGTTTAACACTCACGTCAGTAATAGCCTTCTTGGCCTTCTCTTCAGCATTTCTGGCCTCCTGAATTGTATCATCCACTTCACCTTGGACCTGCACCAGATCAGCCTCAAGCTTCTTCTTGGTGTTGATTAGACTGGTGTTCTTTTAAATAGGAAAACAAATAATCCTGTATtggaaatatgtaaaaataaaatgccaaTATAACAGCAAAAAGACAAGCTGGTAGAACTTACCTGAGAGTGCAGCAGTGCCACACGCTCACTGGCATCCACCAGCTCCTGTTCAGCCACTTTGCggcctctctctgtctgctccAGTGCAGATCTCAGCTCCTCAATCTCAGCCAGCATCAGGTTATTCCTGCGCTCCACCATGGCTACCTGCTCCTTCATGTCTTCCTGTCCTCTGACAGCCTCATCAAGGTGCAGTTGAGCATCCTGAAGTGTAAGGAATAATTATTACAAGGTGTCCTAAACTACaagcatgttttaaaatgttatgttaaaaaaacattacaggTATACCTTGAGCTGTCCTTGGACGTTCCTGAGCTGTTTCTGAGCTTCAGAAGCCTGGCGATTTGCATGGCTCAGCTGAATCTCCATCTCATTTAGATCTCCCTCCATTTTCTTCTTGACTCTGAGGGCATCATTTCTGCTCCTGACCTCAGAATCCAGAGTGCTCTGCATGGACTCAATCACCCTCTGGCTGTTCCTCTTGATCTGCTCCATCTCCTCGTCCTTCTCAGCCAGCTTCCTGTCAATCTCACTCTTTACCTGGTTGAGTTCAAGCTGAATACGAAGAATCTTGGATTCTTCATGTTCAAGTGTGCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259133 lncRNA downstream 559 18711234 ~ 18749480 (-) False LOC111195399
TU259111 lncRNA downstream 1339 18711234 ~ 18748700 (-) False LOC111195399
TU259123 lncRNA downstream 1681 18711234 ~ 18748358 (-) False LOC111195399
TU259114 lncRNA downstream 4662 18708319 ~ 18745377 (-) False LOC111195399
TU259115 lncRNA downstream 17850 18711234 ~ 18732189 (-) False LOC111195399
TU259459 lncRNA upstream 246491 19045406 ~ 19099824 (-) True G191296
TU259491 lncRNA upstream 396012 19194927 ~ 19196386 (-) True G191321
TU259559 lncRNA upstream 429819 19228734 ~ 19229174 (-) True G191326
TU259560 lncRNA upstream 429980 19228895 ~ 19229174 (-) False G191326
TU259562 lncRNA upstream 450289 19249204 ~ 19249453 (-) True G191328
XM_007256676.3 mRNA downstream 258591 18488677 ~ 18491448 (-) True LOC103038294
XM_022682536.1 mRNA downstream 261462 18483415 ~ 18488577 (-) True LOC103029431
XM_007256677.3 mRNA downstream 282987 18456589 ~ 18467052 (-) True LOC103038600
XM_022682534.1 mRNA downstream 299332 18434535 ~ 18450707 (-) True nckipsd
XM_015607725.2 mRNA downstream 321311 18417224 ~ 18428728 (-) True slc25a20
XM_007234443.3 mRNA upstream 1014 18799929 ~ 18844551 (-) True cacna2d2
XM_022682542.1 mRNA upstream 1014 18799929 ~ 18836162 (-) False cacna2d2
XM_007234445.3 mRNA upstream 50985 18849900 ~ 18861224 (-) True acy1
XM_022682543.1 mRNA upstream 50985 18849900 ~ 18861099 (-) False acy1
XM_007234444.3 mRNA upstream 63650 18862565 ~ 18870053 (-) True abhd14a
TU259137 other downstream 21243 18709030 ~ 18728796 (-) False LOC111195399
TU258958 other downstream 434930 18311506 ~ 18315109 (-) False LOC103041510
TU258917 other downstream 536509 18139363 ~ 18213530 (-) False mrpl20
XR_002651616.1 other downstream 574922 18167418 ~ 18175117 (-) False LOC111195395
TU258703 other downstream 1530259 17217321 ~ 17219780 (-) True G190788
TU259248 other upstream 98594 18897509 ~ 18902257 (-) True LOC103032794
XR_002651627.1 other upstream 2709137 21508052 ~ 21508261 (-) True LOC111195406
XR_002651626.1 other upstream 2712009 21510924 ~ 21544831 (-) False elmo2
TU260340 other upstream 3048054 21846969 ~ 21851642 (-) False G191862
TU260341 other upstream 3048054 21846969 ~ 21851642 (-) True G191862

Expression Profile