RNA id: TU259248


Basic Information

Item Value
RNA id TU259248
length 1877
RNA type TUCP
GC content 0.43
exon number 4
gene id LOC103032794
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18897509 ~ 18902285 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCTGGCCTGCTGATGGTAGCTGGCTGGTGATCAGGGTGTAAAACAGGACATTTACCGGATAAAGCGGGTTAATGTTCAGCCCGGCCGCGGCGGGTCATACAGCGGCCCGCTCTGAGTGAAGGACGCTGGGTTTAGTTGCTGCCAAACCTTCTGCGTCTTCAAAGCACAGCCATCAGCATTCTGCACATTTGTTCCTACACAGCTGCGAGTGAGCACTGGCCAAGAAAATAATGTCCTGCGGTTGAAGATGGGAGGCAGCGGCTCCAAAGGTAAAGGTTATTGGCCTTTTTCTGGCTCAGGTGGAGGAGATGAATCAACCAAAGAAGGCCAGGAGCAGACCCTGGCCAGGGTCCGGAGCTTCCGAAATGGGACTCCCTTCGTGTTTACCAGGAGGAGCTCCATGTACTTTGATGAGGATGGTGACCTGGCCCACGAATTCTACGAAGAGACGGTGGTGACGAAGAACGGTCGAAAGAAAGCCAAGTTGAAAAGGATCCAGAAGAACCTCATACCTCAGGGAATTATAAAGCTGGATCACCCCTGCCTCCATGTAGATTTTCCAGTCATCATATGTGAGATTTGATGAAGGAGAACACACtcggctcacacacacacgctgcagAGATTCCGTCCCTTCCTTttgctcctcttcctctctgccGGATCCTGGATATTCTCTGTGTGTAGCGCCCCAGGTGGTCGCTCCGGGTCACTGCATGCTTGTGGACTGGCGGGCTGGGAAGCGGTGCCCGCATGGTTTGGGAAAGACAGTGACGATCCTGTTCAATGTCACTGGGGTGTGTTTCACAACCCCAgcctgtgagagtgtgtggactatgatatatatatatagtgcgtgtgtgtgcgcgtgtgtgtctTTTACTGATCATTGATGTGGGGCGATGCAAATGCTTTAGTGCCTCATTCTCTGTGTTCTGTCAGTATGTTCTAGATGTAGGTTATTTAGGTGCAGAATGTATGAATGAATCATTTTCCCTCATTAAGCAGGAAGGATCTAGAATTGAATTTCTTATATCACACCaatgtagaacagtgtaaacaGTTTTAGAATGCAGCTTAGTAGTTCAAACTGTGATACTGTTCTAGAATCTCATAAAACAATTATAATGGTTACATTTGGCTTACAAATGCACAGttctacactcttaaaaaatatacaacaaacattttaaagtttaaagagtctACACATAGTGTAAACTTTTCTAGGAGGAAGCCTTTAATTGTTCGAGATGCTTTTGCATTATGTTATTGTCCTCTAAATCTTATTTGAAGTTATGTTGAAAAGTTATTTGAACTTTGAACATAAGGAACCTTTTGTGACACGTATTTTGTCTTTGTGACGGTTCTTTAAATTTTGGATTCTTCACACTTGcatctcatttatttaaaaaagtagtgCTTTAGGGAACGAACAAAGGCACTCTGCATGAaaaaacagcttattttttcatatttggtattatttttaaaagtgtagaaCTATTCCACAACACTATTAGAGGGACATTTGTTGTTCTAACAAGAGCTGTAAGTTTCCCAACACAGAATAGAGGCCCAGGCTTTAGAACACTTagacatatttatataaataaacgtAATTAATCATGAATTTCTTTTCACTGTGCATGTAGTCAATTTGTGTCAACCcaaagtgtttattttgtatcaGGCAGTAGGAGACAGTGGCTGTGTACAATGCTGTGATTGGATAATCTTTTGTTACAGTAATCATGATGATGCTCTGTTGATCTGGTAGCAGTGCAGAGCCTCACTCACTGTGACCTGCCCTCTGTCCACTGCTGTTGCGTGTTCAATTTCACTGTTAATTTATTGCACATGGTAcgattgggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259119 lncRNA downstream 98594 18711234 ~ 18798915 (-) True LOC111195399
TU259149 lncRNA downstream 98594 18750039 ~ 18798915 (-) False LOC111195399
XR_002651619.1 lncRNA downstream 98766 18786218 ~ 18798743 (-) False LOC111195399
TU259116 lncRNA downstream 107103 18708319 ~ 18790406 (-) False LOC111195399
TU259147 lncRNA downstream 107103 18711234 ~ 18790406 (-) False LOC111195399
TU259459 lncRNA upstream 143149 19045406 ~ 19099824 (-) True G191296
TU259491 lncRNA upstream 292670 19194927 ~ 19196386 (-) True G191321
TU259559 lncRNA upstream 326477 19228734 ~ 19229174 (-) True G191326
TU259560 lncRNA upstream 326638 19228895 ~ 19229174 (-) False G191326
TU259562 lncRNA upstream 346947 19249204 ~ 19249453 (-) True G191328
XM_022682545.1 mRNA downstream 3978 18872251 ~ 18893531 (-) True LOC103032073
XM_007234449.3 mRNA downstream 6564 18872251 ~ 18890945 (-) False LOC103032073
XM_007234447.3 mRNA downstream 10141 18872251 ~ 18887368 (-) False LOC103032073
XM_007234444.3 mRNA downstream 27456 18862565 ~ 18870053 (-) True abhd14a
XM_007234445.3 mRNA downstream 36285 18849900 ~ 18861224 (-) True acy1
XM_007234451.3 mRNA upstream 1160 18903417 ~ 18920755 (-) False LOC103033109
XM_007234452.3 mRNA upstream 1160 18903417 ~ 18911788 (-) True LOC103033109
XM_007234454.3 mRNA upstream 24770 18927027 ~ 18947393 (-) True rad54l2
XM_007234459.3 mRNA upstream 297421 19199678 ~ 19203330 (-) True LOC103035575
XM_007234460.3 mRNA upstream 303798 19206055 ~ 19213656 (-) True LOC103035880
TU259141 other downstream 134081 18711234 ~ 18763428 (-) False LOC111195399
TU259137 other downstream 168713 18709030 ~ 18728796 (-) False LOC111195399
TU258958 other downstream 582400 18311506 ~ 18315109 (-) False LOC103041510
TU258917 other downstream 683979 18139363 ~ 18213530 (-) False mrpl20
XR_002651616.1 other downstream 722392 18167418 ~ 18175117 (-) False LOC111195395
XR_002651627.1 other upstream 2605795 21508052 ~ 21508261 (-) True LOC111195406
XR_002651626.1 other upstream 2608667 21510924 ~ 21544831 (-) False elmo2
TU260340 other upstream 2944712 21846969 ~ 21851642 (-) False G191862
TU260341 other upstream 2944712 21846969 ~ 21851642 (-) True G191862
XR_002651628.1 other upstream 3447090 22349347 ~ 22362457 (-) True alas1

Expression Profile