RNA id: TU259575


Basic Information

Item Value
RNA id TU259575
length 2369
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id LOC103036492
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 19511321 ~ 19528580 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTATACTGTTAGCATACTAACATACTAACACTAAGCTAGCTAGGAAGTTTCTGTAGTGCCACTGTAGTTTTGTACAAGTACAAgtggacagaaataaaattaaaaatatatatattttaaatataagttTGGAAATAACAGGAAATCAGAAACAGTAAAGAGGAAAACCAAGTTTTGAATAGCTTTCTAGCTTATTAATCATCTTGCAGTACTCTACttcttttcctccaccagtGTTTGGAgaggtttttttatataacagtaGATTTGCATACAAGACGGCAATCACTAGAAACTGTAATttgtttaaacatatttaattctGGGGTTTTGTGACACTTTATTGTGGCAGCTGATGAGTCTGTGGTTCACCATGGATGACCTTAATGtctctttttaatatatatatatatattgtcccagaaataattgtaattaacaATATTGTTGGCTTTTTAAGAActatttttaaacactattttattctattgatATAATGCTGAtacaataacataataatactttattttaaaatatataattaaacatattattaaGGATATTCAGACATTggacattttaatataaagcatgttaaaaaatacaatttaaatagtttaatcatttaaaacaaagtaaacataCCGGCCCATTAAGTAAACTAATGCACTTTCCTCCAATATTAAGGCctgcaaaaatatattaagcaaaataatTATGTTGACAGGCCTAGCTGTGGCTCTGCTGGACTCCAAAACGTATAaggaaattttatattttatatatataacaacaaGCACATGAAGCAGCATTTGtataagtatatttaattatgGGATTTTGGAAGAGTTTATTGTTTTGGCTTATGATTAATATATCCATATAGTACACTataagtcaaataaataaagtaatcatTGTGACAAACCTTAGATATAAATGCTTAGAGACGTTCCTCCTATCTATGCATCTCAGTTTATGACGCTACATTAGCATAGCAAACCCAGGCTGCCTTAAATCTGTGCCTATATCTCAGATTTTCaccgtttttttatttaataataatgttaccATTTCAAACATCTACACCTTAAGAAACAGTCCAAAGAATCAAGGTTATACTGTTTATAATGGAACAACTTGGGCGCTACATGCTAGCATATTGAggccttatatatttttgttctgtTCATTTATAGGGACGTTTATTAAGATTTGCACACAGTCTTTGCTAAAATTAAGGTACATAGATAGGTGTAAGTTGAAAAGCATTTAAATTTGTGGGAATCTATCAGTAGAAGGTTCTTTGTTTAAACCTAGCTCTACtgaatgctaaatgctaaaagctaaaaaataaatgctaaatctgtAAACATGCTCTAAAACCTGTGGTAATAATTGGTCTTAAACATGGAAGAGTTAATTTTTCACCTtaagcactaaggctaggtgcagcagcattagcattagccgctaaccgcagtgctagtgAGTTGTAAGCGCTGGCTaatagcgctagactgaggaaccctgagtgttccggtaacccagggtgctatcagctagcggttcatcccacatagcttgttttaccacagtaaacacgcaggctacagtctgatatactcgcctcgagctgtgaaagagctagcgctgcggttagcagctaatgctaatgctgctccagactccagtggctttactgctccttaatacctgactggtagaattcatacataaggagcaccggattataaactgcactgacaatttttgggaaaattaaaggattttaagtgcaagttttatagtgcaaaaaaatatggtcAACTTTAaattgaagtcaatgtaaaaagtgtttatttcaggtaCTTTTATAGATTttgtattggtccattcatcaagtaattttgacacagtataaggaacagtttatttatttaaattatgaagtgaactaaaaatcatcaaaaagtgaaaagtgacGATATGTAGTGTGCAGCGTGCTAATCTCTCAGTTAgcttattttgcattattagcCGCATCTTTTGCATGTAGGACTTTAAACCAAGTCATTTTTTATTGAGGTCTGGGTGTAAACACTAATTCTGTGTATTGGTGTTGTATTTATTGGTTTCAGAGTTTCAGCAATATgttgattacatttttcttgGTTAAACTTTGCTTTTGGATTATTGACTAAATATGGCTAAATTGCTTATAAATGTGCCTTAGTGCCTGAGATGAGTTTgttgaaaaattaaataactcTAATCTCAATCTGGAACTTATATATTGAACTTGCTATGTGCGGAATCGCAGCTTTTAGGTGCAGTTTTTACAACAATAAACACTAAATTTGTTGCT

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0007600 sensory perception biological_process
GO:0007606 sensory perception of chemical stimulus biological_process
GO:0007608 sensory perception of smell biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259585 lncRNA downstream 90485 19418231 ~ 19428960 (-) True G191337
TU259587 lncRNA downstream 190823 19327966 ~ 19328622 (-) True G191339
TU259563 lncRNA downstream 266356 19252876 ~ 19253089 (-) True G191329
TU259562 lncRNA downstream 269992 19249204 ~ 19249453 (-) True G191328
TU259560 lncRNA downstream 290271 19228895 ~ 19229174 (-) False G191326
TU259586 lncRNA upstream 11113 19532946 ~ 19562551 (-) True G191338
TU259606 lncRNA upstream 88551 19610384 ~ 19613834 (-) True LOC111195401
TU259607 lncRNA upstream 88551 19610384 ~ 19618060 (-) False LOC111195401
XR_002651620.1 lncRNA upstream 88804 19610637 ~ 19613856 (-) False LOC111195401
TU259611 lncRNA upstream 98343 19620176 ~ 19620410 (-) True G191357
XM_022682549.1 mRNA downstream 33368 19424040 ~ 19486077 (-) True LOC103044255
XM_022682550.1 mRNA downstream 101937 19391793 ~ 19417508 (-) True LOC103044542
XM_007254559.3 mRNA upstream 871 19522704 ~ 19528580 (-) False LOC103036492
XM_007254561.3 mRNA upstream 12834 19534667 ~ 19564175 (-) False LOC103037097
XM_007254560.3 mRNA upstream 15168 19537001 ~ 19564176 (-) True LOC103037097
XM_022682575.1 mRNA upstream 53865 19575698 ~ 19604021 (-) True LOC103035977
XM_007254578.2 mRNA upstream 263741 19785574 ~ 19792464 (-) True LOC103043652
TU259248 other downstream 617188 18897509 ~ 18902257 (-) True LOC103032794
TU259141 other downstream 756017 18711234 ~ 18763428 (-) False LOC111195399
TU259137 other downstream 790649 18709030 ~ 18728796 (-) False LOC111195399
TU258958 other downstream 1204336 18311506 ~ 18315109 (-) False LOC103041510
XR_002651616.1 other downstream 1344328 18167418 ~ 18175117 (-) False LOC111195395
XR_002651627.1 other upstream 1986219 21508052 ~ 21508261 (-) True LOC111195406
XR_002651626.1 other upstream 1989091 21510924 ~ 21544831 (-) False elmo2
TU260340 other upstream 2325136 21846969 ~ 21851642 (-) False G191862
TU260341 other upstream 2325136 21846969 ~ 21851642 (-) True G191862
XR_002651628.1 other upstream 2827514 22349347 ~ 22362457 (-) True alas1

Expression Profile