RNA id: TU259580


Basic Information

Item Value
RNA id TU259580
length 1006
lncRNA type sense_over
GC content 0.34
exon number 3
gene id LOC103036492
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 19511321 ~ 19528580 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taccagattgATTTCAGAGTTTTGAATTTGGCCATTGATGACTTTACAATATttctacaatatttttttttatgtttaaatagtcAAAATACATCAGTagtgccagattcacattataaattaaatggAATTTAGTTAATCAGGGATTTTATCTACTGTCAATAATCCACAATACATAATAGCACTAACATACAACAACATAATCTACTAGTAtcgtgtcccatgatttttgccattaCCCATGCCTTCCCTGTCCCATCAGTCTGGTActttgccttgccatgagcacattggccaTTGTTCAGcttcacttacaagataacacctcacaacaaaCACGATTTACCTACTGTTGATTTAAtcataatgcttttttttttttaccagatatATGAGATGGATATATTTCTGAGTTCTGAACTTGGCCATTGATGACTTTAGAATAtttctacaatttttttttatgtttaaatagtcAAAATACACCAGTAGTGCCAGATTcactttataaattaaatataatttagttaATCAGGGATTTTATCTACTGTCAATAAGCTACAATATGCTCATAAATGTATATTGTAGTGTAATTTAAGCATAATATCGCTAACACACAACAACATACTCCACTAGTAtcgtgtcccatgatttttgccttAACCCGTGCCTTCTCTGTCCCATCCGTCTGgtacattgccttgccatgagcacattggccagtgttcagcttcacttacaagataacacctcacaacctcacAACAGACACGATTTACCTACTGTTGTCCTGTGCTTTTTGACATATTAATGTGTATTGTGCTACAGCCCACTCTGAATACTGACatagaatatacagctctggaaaaaaataagagaccacttaaaaatgatgagtttctttgaatttaccaaattgaaaacctctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaccaaactgaactgcttgaatttttgcaccagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259585 lncRNA downstream 82361 19418231 ~ 19428960 (-) True G191337
TU259587 lncRNA downstream 182699 19327966 ~ 19328622 (-) True G191339
TU259563 lncRNA downstream 258232 19252876 ~ 19253089 (-) True G191329
TU259562 lncRNA downstream 261868 19249204 ~ 19249453 (-) True G191328
TU259559 lncRNA downstream 282147 19228734 ~ 19229174 (-) True G191326
TU259586 lncRNA upstream 7432 19532946 ~ 19562551 (-) True G191338
TU259606 lncRNA upstream 84870 19610384 ~ 19613834 (-) True LOC111195401
TU259607 lncRNA upstream 84870 19610384 ~ 19618060 (-) False LOC111195401
XR_002651620.1 lncRNA upstream 85123 19610637 ~ 19613856 (-) False LOC111195401
TU259611 lncRNA upstream 94662 19620176 ~ 19620410 (-) True G191357
XM_022682549.1 mRNA downstream 25244 19424040 ~ 19486077 (-) True LOC103044255
XM_022682554.1 mRNA downstream 93813 19391793 ~ 19417508 (-) False LOC103044542
XM_022682553.1 mRNA downstream 93813 19391793 ~ 19417508 (-) False LOC103044542
XM_022682551.1 mRNA downstream 93813 19391793 ~ 19417508 (-) False LOC103044542
XM_022682550.1 mRNA downstream 93813 19391793 ~ 19417508 (-) True LOC103044542
XM_007254561.3 mRNA upstream 9153 19534667 ~ 19564175 (-) False LOC103037097
XM_007254560.3 mRNA upstream 11487 19537001 ~ 19564176 (-) True LOC103037097
XM_022682575.1 mRNA upstream 50184 19575698 ~ 19604021 (-) True LOC103035977
XM_007254578.2 mRNA upstream 260060 19785574 ~ 19792464 (-) True LOC103043652
XM_022682848.1 mRNA upstream 361565 19887079 ~ 19891108 (-) True LOC111195449
TU259248 other downstream 609064 18897509 ~ 18902257 (-) True LOC103032794
TU259141 other downstream 747893 18711234 ~ 18763428 (-) False LOC111195399
TU259137 other downstream 782525 18709030 ~ 18728796 (-) False LOC111195399
TU258958 other downstream 1196212 18311506 ~ 18315109 (-) False LOC103041510
XR_002651616.1 other downstream 1336204 18167418 ~ 18175117 (-) False LOC111195395
XR_002651627.1 other upstream 1982538 21508052 ~ 21508261 (-) True LOC111195406
XR_002651626.1 other upstream 1985410 21510924 ~ 21544831 (-) False elmo2
TU260340 other upstream 2321455 21846969 ~ 21851642 (-) False G191862
TU260341 other upstream 2321455 21846969 ~ 21851642 (-) True G191862
XR_002651628.1 other upstream 2823833 22349347 ~ 22362457 (-) True alas1

Expression Profile