RNA id: XM_007254559.3


Basic Information

Item Value
RNA id XM_007254559.3
length 1701
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC103036492
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 19511321 ~ 19528580 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTTCCTGTCTGTCAATCTCCGGCCCCGCCCTCTTTGGATGGGCGTGGCCGACGTGTCTAAACAAAGGCAGGACGAGGATCCAACATGGGAGAGAGCTTCCATGAGCAGTTACGGGTGGACAGCTGGTTCCTGAAGTCTGACCGTCGTCTGGACACGGAGCTAGTGGATAAACTCATCCTGCAGCTGAACCGGATCTACCCGCAGATCCTCACCGATAAGGAGGCCACCAGGTTCCGGGATCTGGACGTGCCCACCTGTGTGCGTCTGGCGGAGCTGCTGGCGTTCCTGCAGGAGAAAGGTGAGGAGGCGTGCAGGGAGTTTTACCGCGCTCTGCACCTGCACGCCGAGGAGCTGTACTTCAGCCTGCCCACTCGCCTCCGCCGCCGCAGAGACTCTTTTGGTCCATTGCCGGGTCCAGTTGTCGTCCCAACAGATAGATTTGTGCTGAATGATCAGGGCCCGTTATTCTTTCTGAGCTGCTTCACTGCTGTTGTAGGAGGAGCTTTATTATATTACCACAGGGacttTAAGGGAGCGTCCGGATCCTGCAGTGCTCTGGGTCTGGCTGCTCTCGGGATCGGGAGGCGGGTTAAAGAAGTTCTCATCTGGTACACATAGGATGGACGCGGCGCTGAGACGGTGTTGCCATGGGTTACCGTGCAGCATCCTCTATGGGAAAGCTGCAGATCCCAAGCCCGGGTTTAAGTGCCTCAGAACATCAGCATCTGTACATACTGAAACTATAACTGTAAATAATGCAGCCGCTGCCATTTTTAAAGCTTCTATATCCTATATGATGGCCTGCAGAGGGTCCAGCTGCTTTACTGTccagatgatctgagatgagttttaaaaagacaaaactgATCCTAGATCAGGAATCTGAATCTCAGAAGAAGAAATGTTTTAAGTGTCCTTAACAGTAGAGGCATGTGTGTTACTTATAACTGTTATTATGAGTAGTATAGCTTATATTAATATATGGTCTATATGAGGAATATAAGGATGGGCTACCTTGTAATAGTcctgtaataataatgatattatatatacattatatataatatttaggtTGATCAAACtaatcatattgtttttttttaccagatttaTGAGATTTCAGAGTTTTGAATTTGGCCATTGATGACTTTACAATATttctacaatatttttttttatgtttaaatagtcAAAATACATCAGTagtgccagattcacattataaattaaatggAATTTAGTTAATCAGGGATTTTATCTACTGTCAATAATCCACAATACATAATAGCACTAACATACAACAACATAATCTACTAGTAtcgtgtcccatgatttttgccattaCCCATGCCTTCCCTGTCCCATCAGTCTGGTActttgccttgccatgagcacattggccaTTGTTCAGcttcacttacaagataacacctcacaacaaaCACGATTTACCTACTGTTGATTTAAtcataatgcttttttttttttaccagatatATGAGATGGATATATTTCTGAGTTCTGAACTTGGCCATTGATGACTTTAGAATAtttctacaatttttttttatgtttaaatagtcAAAATACACCAGTAGTGCCAGATTcactttataaattaaatataatttagttaATCAGGGATTTTATCTACTGTCAATAAGCTACAATATGCTCATAAATGTATATTGTAGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259575 lncRNA downstream 871 19519445 ~ 19521833 (-) True LOC103036492
TU259577 lncRNA downstream 871 19519445 ~ 19521833 (-) False LOC103036492
TU259585 lncRNA downstream 93744 19418231 ~ 19428960 (-) True G191337
TU259587 lncRNA downstream 194082 19327966 ~ 19328622 (-) True G191339
TU259563 lncRNA downstream 269615 19252876 ~ 19253089 (-) True G191329
TU259586 lncRNA upstream 4366 19532946 ~ 19562551 (-) True G191338
TU259606 lncRNA upstream 81804 19610384 ~ 19613834 (-) True LOC111195401
TU259607 lncRNA upstream 81804 19610384 ~ 19618060 (-) False LOC111195401
XR_002651620.1 lncRNA upstream 82057 19610637 ~ 19613856 (-) False LOC111195401
TU259611 lncRNA upstream 91596 19620176 ~ 19620410 (-) True G191357
XM_022682549.1 mRNA downstream 36627 19424040 ~ 19486077 (-) True LOC103044255
XM_022682554.1 mRNA downstream 105196 19391793 ~ 19417508 (-) False LOC103044542
XM_022682553.1 mRNA downstream 105196 19391793 ~ 19417508 (-) False LOC103044542
XM_022682551.1 mRNA downstream 105196 19391793 ~ 19417508 (-) False LOC103044542
XM_022682550.1 mRNA downstream 105196 19391793 ~ 19417508 (-) True LOC103044542
XM_007254561.3 mRNA upstream 6087 19534667 ~ 19564175 (-) False LOC103037097
XM_007254560.3 mRNA upstream 8421 19537001 ~ 19564176 (-) True LOC103037097
XM_022682575.1 mRNA upstream 47118 19575698 ~ 19604021 (-) True LOC103035977
XM_007254578.2 mRNA upstream 256994 19785574 ~ 19792464 (-) True LOC103043652
XM_022682848.1 mRNA upstream 358499 19887079 ~ 19891108 (-) True LOC111195449
TU259248 other downstream 620447 18897509 ~ 18902257 (-) True LOC103032794
TU259141 other downstream 759276 18711234 ~ 18763428 (-) False LOC111195399
TU259137 other downstream 793908 18709030 ~ 18728796 (-) False LOC111195399
TU258958 other downstream 1207595 18311506 ~ 18315109 (-) False LOC103041510
XR_002651616.1 other downstream 1347587 18167418 ~ 18175117 (-) False LOC111195395
XR_002651627.1 other upstream 1979472 21508052 ~ 21508261 (-) True LOC111195406
XR_002651626.1 other upstream 1982344 21510924 ~ 21544831 (-) False elmo2
TU260340 other upstream 2318389 21846969 ~ 21851642 (-) False G191862
TU260341 other upstream 2318389 21846969 ~ 21851642 (-) True G191862
XR_002651628.1 other upstream 2820767 22349347 ~ 22362457 (-) True alas1

Expression Profile