RNA id: TU260072


Basic Information

Item Value
RNA id TU260072
length 1207
lncRNA type sense_over
GC content 0.41
exon number 3
gene id brk1
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21099347 ~ 21103218 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCGCTGCGGAGCCACTAAAACAAACGCAGCGGCTTCAGTAGATCAACATGGCCGGACAGGAGGATCCAGTGCAGAGAGAAATCCACCAGGACTGGGCAAATCGCGAGTATATCGAAGTGATTACCAGCAGCATCAAGAAAATAGCCGATTTCCTCAATTCCTTCGATATGTCGTGCAGGTCCCGCCTAGCCACCCTGAATGAGAAGCTGACTGCCCTGGAGAGGAGGATTGAGTACATTGAAGCCAGAGTTACGAAAGGGGAAACACTGACCTAAATGTCTCGACGCAGAGGACGAGAAAAATGGCCACTCTCcgttttttcctccttttccaTTCAAGTTCAACAACTCAACCAACTGTCACTTGACAGACTGTTTTAGACCAGCCTCTTAAAGCCCAAATTAGGAACTGCTGCAGCAGCACCATCACTGGACTGATTCTGAGTTCTGTTTCTGAAAAAGAGAACGTGGAAAACATGCACATTTTACGTTTTAAGAGGGGCATTCTTTAAAAGTCTCTTGTTTTGAGCAGCTGCTGCAGTTCCTAATTGGGGCTTTAACGTGCGGGACCATTGTGATGACGTCTATgagcattttaaatgtgttccACACTTTCTGCCTCAGtatgaacaatgttgttttattttggatccTTGGTTTGGGTCAGTTGACTTGTTACATACGATTGATTGGTCCCCTTTTTAACTTTGCTCTCAAGCTTGAACAGCTGTTCTAAACATGCAAACTTAGACACTAAACCTTTTAGAAATATTGAGCGTTCAGTAAAGtaatcagtaaataaaacatgGACAGAAGAATAGCCTGGATGCCTTCCAGATCATAACGgttccattttatttttaactgaacaaaaaaaaaaaagataattgtgagaattgtttatttttttgccccTAATGTGTTTAACtagtttctttatatattttgtaattgtttaaaatgcaaaataagCCTGCATATGCAGAAATGTGGCTACCCTTGTCTCTCATGCAATAGAACGAACATCTTAGCAGCTTTACAAAGCACATAATAGCGTGTGTTGGGTGGGGGAGTTTCTAAAGTGCCAATCAGACCATGTTGAAGAGGCGGATGCATCTGCAGCAGTGcggttttgtgttttatttaatgctcATACATTGATGTTTTGTGgtttaaacaaggaaataaaaaaatcaagtaacTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260058 lncRNA downstream 7112 21091820 ~ 21092235 (-) True G191653
TU260052 lncRNA downstream 141791 20956989 ~ 20957556 (-) True G191647
TU259895 lncRNA downstream 573666 20493310 ~ 20525681 (-) True G191557
TU259838 lncRNA downstream 827424 20269621 ~ 20271923 (-) True G191518
TU259818 lncRNA downstream 856174 20181887 ~ 20243173 (-) True G191507
TU260076 lncRNA upstream 2227 21105440 ~ 21106822 (-) True G191664
TU260104 lncRNA upstream 70259 21173472 ~ 21239522 (-) True G191691
TU260215 lncRNA upstream 175790 21279003 ~ 21279752 (-) True G191787
TU260224 lncRNA upstream 200305 21303518 ~ 21370779 (-) True G191791
TU260257 lncRNA upstream 326807 21430020 ~ 21436453 (-) True npff
XM_022682601.1 mRNA downstream 2107 21093650 ~ 21097240 (-) True LOC103031955
XM_022682600.1 mRNA downstream 26929 20837118 ~ 21072418 (-) True itpr1
XM_007254553.3 mRNA downstream 277823 20816597 ~ 20821524 (-) True bhlhe40
XM_007254552.3 mRNA downstream 291896 20795413 ~ 20807451 (-) True LOC103032600
XM_022682596.1 mRNA downstream 476853 20502308 ~ 20622494 (-) False LOC103041184
XM_015607177.2 mRNA upstream 9267 21112480 ~ 21114923 (-) True gpx1
XM_007248356.3 mRNA upstream 239489 21342702 ~ 21348384 (-) True LOC103026802
XM_007248360.3 mRNA upstream 309476 21412689 ~ 21428618 (-) False LOC103027815
XM_007248359.3 mRNA upstream 309476 21412689 ~ 21428618 (-) True LOC103027815
XM_022682851.1 mRNA upstream 326803 21430016 ~ 21433834 (-) False npff
TU259248 other downstream 2197090 18897509 ~ 18902257 (-) True LOC103032794
TU259141 other downstream 2335919 18711234 ~ 18763428 (-) False LOC111195399
TU259137 other downstream 2370551 18709030 ~ 18728796 (-) False LOC111195399
TU258958 other downstream 2784238 18311506 ~ 18315109 (-) False LOC103041510
XR_002651616.1 other downstream 2924230 18167418 ~ 18175117 (-) False LOC111195395
XR_002651627.1 other upstream 404839 21508052 ~ 21508261 (-) True LOC111195406
XR_002651626.1 other upstream 407711 21510924 ~ 21544831 (-) False elmo2
TU260340 other upstream 743756 21846969 ~ 21851642 (-) False G191862
TU260341 other upstream 743756 21846969 ~ 21851642 (-) True G191862
XR_002651628.1 other upstream 1246134 22349347 ~ 22362457 (-) True alas1

Expression Profile