RNA id: XM_022682851.1


Basic Information

Item Value
RNA id XM_022682851.1
length 674
RNA type mRNA
GC content 0.48
exon number 3
gene id npff
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21430016 ~ 21436453 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGAGGCTGGAGTGTGGTTCACGATGTTCGGGGTTCTGCTGGCCGTGACTGGGACGGGTCACTGCGTTCAGGAGGGAGAGGTTCTGGAGCCGAGCGGCCGGCTGACCATGGATTCAGAGGAGATCCTTCCAGAGAACCTGGTAAGATCTGCAGTAAGAACTGACCctgGAGGAATTGGTCGTATTCTGGAGGACCGTCTGCTGACCTCAGTACTGCGCTCTCTTCTCCACGGATCTCAGAGACACACCCGCAACCCTTCAGTCCTGCATCAGCCTCAGcgATTTGGTCGGGGTACTCGAGGGGACCTGCCCGCAGAGGAGAGGATACAGTCACGAGACTGGGAGACCGTCCCGGGGCAGATCTGGAGCATGGCAGTCCCTCAGAGATTCGGCAAAAAGTAGAACAGGATCAGACCAGACCAAGCATTACAGACCATCACCACACCTCCATACATCatacctcacctcacctcacaccACCTGCTGCTCTCTGTTAGATTCACCTGTTTGAGTGttaatatataatctatatcaataaaataaacatataatatagaACCATGTGCCATAAATAAGTCAGCTATTCATTAGTTATCAATTAGTTATCAATTAGTTATCATAGAAAATGTACAGGAATCAGAAAGTGGaataaaaatgagttttaaaaaggaaaa

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0005184 neuropeptide hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260224 lncRNA downstream 59237 21303518 ~ 21370779 (-) True G191791
TU260215 lncRNA downstream 150264 21279003 ~ 21279752 (-) True G191787
TU260104 lncRNA downstream 190494 21173472 ~ 21239522 (-) True G191691
TU260076 lncRNA downstream 323194 21105440 ~ 21106822 (-) True G191664
TU260072 lncRNA downstream 326803 21099347 ~ 21103213 (-) False brk1
TU260283 lncRNA upstream 92325 21526159 ~ 21528036 (-) True G191812
TU260302 lncRNA upstream 276082 21709916 ~ 21711285 (-) True G191827
TU260335 lncRNA upstream 399308 21833142 ~ 21833495 (-) True G191858
TU260349 lncRNA upstream 426292 21860126 ~ 21924848 (-) True G191870
TU260360 lncRNA upstream 524007 21957841 ~ 21958432 (-) True G191880
XM_007248360.3 mRNA downstream 1398 21412689 ~ 21428618 (-) False LOC103027815
XM_007248359.3 mRNA downstream 1398 21412689 ~ 21428618 (-) True LOC103027815
XM_007248356.3 mRNA downstream 81632 21342702 ~ 21348384 (-) True LOC103026802
XM_015607177.2 mRNA downstream 315093 21112480 ~ 21114923 (-) True gpx1
XM_007254551.3 mRNA downstream 326798 21099347 ~ 21103218 (-) True brk1
XM_007248365.3 mRNA upstream 8454 21442288 ~ 21498063 (-) False itga7
XM_007248364.3 mRNA upstream 8454 21442288 ~ 21498063 (-) False itga7
XM_022682603.1 mRNA upstream 8454 21442288 ~ 21498063 (-) True itga7
XM_022682604.1 mRNA upstream 8871 21442705 ~ 21498063 (-) False itga7
XM_022682606.1 mRNA upstream 77090 21510924 ~ 21544831 (-) False elmo2
TU259248 other downstream 2527759 18897509 ~ 18902257 (-) True LOC103032794
TU259141 other downstream 2666588 18711234 ~ 18763428 (-) False LOC111195399
TU259137 other downstream 2701220 18709030 ~ 18728796 (-) False LOC111195399
TU258958 other downstream 3114907 18311506 ~ 18315109 (-) False LOC103041510
XR_002651616.1 other downstream 3254899 18167418 ~ 18175117 (-) False LOC111195395
XR_002651627.1 other upstream 74218 21508052 ~ 21508261 (-) True LOC111195406
XR_002651626.1 other upstream 77090 21510924 ~ 21544831 (-) False elmo2
TU260340 other upstream 413135 21846969 ~ 21851642 (-) False G191862
TU260341 other upstream 413135 21846969 ~ 21851642 (-) True G191862
XR_002651628.1 other upstream 915513 22349347 ~ 22362457 (-) True alas1

Expression Profile