RNA id: TU260364


Basic Information

Item Value
RNA id TU260364
length 204
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G191884
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21966509 ~ 21966712 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaatggctagtggaagtgatggcacggagacagacaccgattctccttatgaacattttcatcacctggtaagaaacccacaattgcagtgtcatgagcaaatgtctacaatgagcagtttcaaagaacgtatagtgatttctagattgtagtgtgaaaaaaagtatttatttgaatatctcacgaaaaaagtaaaatgaac

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260360 lncRNA downstream 8077 21957841 ~ 21958432 (-) True G191880
TU260349 lncRNA downstream 41661 21860126 ~ 21924848 (-) True G191870
TU260335 lncRNA downstream 133014 21833142 ~ 21833495 (-) True G191858
TU260302 lncRNA downstream 255224 21709916 ~ 21711285 (-) True G191827
TU260283 lncRNA downstream 438473 21526159 ~ 21528036 (-) True G191812
TU260383 lncRNA upstream 32460 21999172 ~ 22002180 (-) True G191898
TU260524 lncRNA upstream 291203 22257915 ~ 22258796 (-) True G192005
TU260528 lncRNA upstream 340895 22307607 ~ 22309156 (-) True G192009
TU260531 lncRNA upstream 375680 22342392 ~ 22342630 (-) True G192012
TU260533 lncRNA upstream 399296 22366008 ~ 22366333 (-) True G192014
XM_007248384.2 mRNA downstream 302910 21647105 ~ 21663599 (-) True cdk4
XM_022682611.1 mRNA downstream 336175 21598127 ~ 21630334 (-) False LOC103033505
XM_007248381.3 mRNA downstream 336175 21598127 ~ 21630334 (-) True LOC103033505
XM_022682609.1 mRNA downstream 383446 21572367 ~ 21583063 (-) True LOC111195407
XM_007248436.3 mRNA upstream 38722 22005434 ~ 22012959 (-) True LOC103023479
XM_022682618.1 mRNA upstream 224112 22190824 ~ 22205696 (-) True tmbim6
XM_022682619.1 mRNA upstream 240410 22207122 ~ 22229088 (-) True avil
XM_022682620.1 mRNA upstream 270735 22237447 ~ 22247617 (-) True ctdsp2
XM_007248393.3 mRNA upstream 292947 22259659 ~ 22280175 (-) False LOC103037062
TU260340 other downstream 114867 21846969 ~ 21851642 (-) False G191862
TU260341 other downstream 114867 21846969 ~ 21851642 (-) True G191862
XR_002651626.1 other downstream 421678 21510924 ~ 21544831 (-) False elmo2
XR_002651627.1 other downstream 458248 21508052 ~ 21508261 (-) True LOC111195406
TU259248 other downstream 3064252 18897509 ~ 18902257 (-) True LOC103032794
XR_002651628.1 other upstream 382635 22349347 ~ 22362457 (-) True alas1
XR_002651631.1 other upstream 744310 22711022 ~ 22722905 (-) False amhr2
TU260753 other upstream 819622 22786334 ~ 22788955 (-) False LOC103041653
TU260862 other upstream 1087921 23054633 ~ 23058805 (-) True G192251
TU261664 other upstream 3244963 25211675 ~ 25217550 (-) True G192815

Expression Profile