RNA id: TU261089



Basic Information


Item Value
RNA id TU261089
length 3061
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G192428
representative True

Chromosome Information


Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23544535 ~ 23559176 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


gaagttttaataaaaatgcttcTTGGCATAGCCTCCGTGAACAGACTGCAGAAATATTACATCATCGGTACCAAAAATAGTTCATGCCAGCTTCAGACCCAGTGAGCTAGGAGCCAGTGGGCAGTGAaacatacaatatttaaaagaaattcaGTCACAtagaaaatggatggatggctgtAGCTTGGTATGGTTGTTATATTATGGTCTATCCAGCTGTTTCTTCCTGAACAATTACACACACGCCAAAAGAACTAAGAAGAACAACTGGGTGTCATACTGGCTGCCATATtggatattttatattattcatcAGAAAGGCCTcagatactgttttttttttatagctgagccaaaatacagtatacagctcCAGCATCCAATTACACAAGTCTGTCtgggttaaaatatatatatttatattgtaccGTTACTGGAGCTGAATAATTGGCATGTTTCATGTGTTGGCGCTGCCATTAGCGTAGTTGTGTAAGCGCTTCTGTTTCAGGCTTCACAGCTTCTGACCATCTGCGGCTGTGAAGCTCCGAGCTAAAGCGTATTCTGCCAGTCTAATATTCACAACCCAACAGCAACACGGGCAGCAATTACAGCCTGAGCCCTGAAAACGCAGGAAATGAGATCAGCCAGAGGATAAACAGGAGCTCAACCCAATTAAACAtaaagcttattgaaacaaacaGTACGGGAGGTTATTGGGGTCTTCAGGGGGGGCAGGACTGGAAAAACATACAGTGGATGAGATGGAGAGACTCTAGAATCTACAGAATATAAAGTAGAAGTTAGATTCACTGTTGAGCCCTTACATTAATACCAACAATTAACAAACAATTAACAAAACTGACTATCTGGTTACACTGCCGTCTGTCAAGGGTCAGGACATATACCCTGACAGGCCAGAAGTCATATGAGAGCAGTATGTTAAACTAAGCATGAAGTGGCACCTCAAAATCATAAAGTgtggtgaggtgttatcttgtgagtgaggccgATCACTggccaacatttaaaaaaattatgggagttgaacTGATGCCTGAGAGTGAATGGGGaataaccgtgctaagtgctagttagctcttttgccattcagaggcgagtatatcggactgtagcttgcTGATAACCCCCCGGCTaccactgctagagcagcattagcattacctgctaaccacgctaagcgctagttatctatttcgccgttcagaggtgagtattatcagactgtatctTGCTGTtaaccctagctagcactgctctTTCTCGCTAGTAAgatctttcgccattcagaggcaagtatagtggactgtagcttgctgctaacccccgactaccactgctggagcagcattagcattacccgctaaccacgctaagtgctagttagccctttcactgttcagagccAAAAATATCAGGCTGTAGCTTGCTGATAACCCCCCGGCTaccactgctagagcagcattagcattacctgctaaccacgctaagcgctagttatctatttcgccgttcagaggtgagtattatcagactgtatctTGCTGTtaaccctagctagcactgctctTTCTCGCTAGTAAgatctttcgccattcagaggcaagtatagtggactgtagcttgctgctaacccaggctaggtctgctggagcagcattagcattacctgcaaACCGAGCTAAgggctagttagctcttttgccattcaaaggtgagtatatcagactgtagcttgGTACTAATCTCGCCTAGCActcctggagcagcattagcattaccggctaactgcactagctctttcgctgttaaGAGATATGTATTATTGGAGtgtagcctgctactaaccctggctagcaccgctggagcagcattagcattacccactattGTAGCCTTCCCATTTACCAtggtaaaacaagctatgtgggacgaaccgctagctaatatcacagtgtagcgctgtttggctagccttagtggaaatttaagcctactgtagaaaaacagaaagcaCTTTACTTccccaaataaacagctttcaggagagaaatctgtgtagattaacatccagcactcgtttggctttaaaaataatgtgcatTATAATCCAGCGTGCCTTgcgcatgaaaatagactagaaaaaaGACGATTATTGACACTGAGctttaaaatctgaaaaatacagtggtAATAATAGCGACTAgtagtgtctggctagaactgtccatgcaaacaaGTGCTAAcctgatttttggcatgttagcgtatatatttatttttgaactTGGCTTTAATTGCTTTAATTTTATGGATAATTAGGGAAAATGGTGTCACAAACTAGTAAATTGCTCAGAGAGAGTTAACTGTTGGCTTGTGcagttatttttaaagcttcagcctaaaaaaaaaaaaaacctgcagatGATGCAAGTTGCTCTACATCCTGAAGCTCTGTGGAAGTCTGACGGCTAAACgccttaataattaattatatactgtacaacTGTAAGGAGTATTATCTGAGAAATGCTGTAAAAACATGTCTTAAGATGCTCGCTCTTCTACAGTACcagtattcatgtttttttaatacatctagaatgatttttttgctttttttattatttttttcttagtttattgTTTCATTAATAAGCCATTTAGTATAGGATAATAGCAAAATAGCCATGACTAAACAGCTTAAATAAACCTCACACAATGAACAGCAACTCATCAAACGTATTCACATGAACGAATGACtttgacaaaacaaaaaaaacaatgaaaagaaaGAGGAATTAGAATAGCGCACCAAGCTTAAGTACCATAGAGCTCTAAGTAAAAGACAAAATACGACTCAATGCAAATCAATGCAAACCTAATACCATAATACATATACAGGAGCACAAAGTAAagcaaatattttgttttttgttgtgttgtgttaatggaatatgaattatgtttttaagcaaatatgggctttacttaaagcagcactaggtaggattttcttgatttttgatctttttaaagaagt

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU260993 lncRNA downstream 215866 23329074 ~ 23329313 (-) True G192365
TU260962 lncRNA downstream 320576 23216176 ~ 23224603 (-) True G192336
TU260961 lncRNA downstream 321810 23215590 ~ 23223369 (-) True G192335
TU260914 lncRNA downstream 390137 23154582 ~ 23155042 (-) True G192293
TU260909 lncRNA downstream 439552 23105108 ~ 23105627 (-) True G192288
TU261126 lncRNA upstream 53883 23602319 ~ 23607031 (-) True G192439
TU261196 lncRNA upstream 328199 23876635 ~ 23884538 (-) True G192484
TU261312 lncRNA upstream 443760 23992196 ~ 24034791 (-) False G192574
TU261313 lncRNA upstream 443760 23992196 ~ 24034791 (-) True G192574
TU261314 lncRNA upstream 443760 23992196 ~ 24049734 (-) False G192574
XM_015601696.2 mRNA downstream 263160 23208885 ~ 23282019 (-) True LOC103047010
XM_007234744.3 mRNA downstream 382760 23159668 ~ 23162419 (-) True LOC103045076
XM_022682663.1 mRNA downstream 400771 23104254 ~ 23144408 (-) False c22h1orf106
XM_022682676.1 mRNA upstream 60817 23609253 ~ 23622118 (-) False nfs1
XM_007234740.3 mRNA upstream 60817 23609253 ~ 23622118 (-) True nfs1
XM_007234736.3 mRNA upstream 76474 23624910 ~ 23635826 (-) False LOC103042624
XM_015601693.2 mRNA upstream 76474 23624910 ~ 23635826 (-) False LOC103042624
XM_007234739.3 mRNA upstream 76474 23624910 ~ 23635826 (-) False LOC103042624
TU260862 other downstream 486374 23054633 ~ 23058805 (-) True G192251
TU260753 other downstream 756224 22786334 ~ 22788955 (-) False LOC103041653
XR_002651631.1 other downstream 822274 22711022 ~ 22722905 (-) False amhr2
XR_002651628.1 other downstream 1182722 22349347 ~ 22362457 (-) True alas1
TU260341 other downstream 1693537 21846969 ~ 21851642 (-) True G191862
TU261664 other upstream 1663239 25211675 ~ 25217550 (-) True G192815
TU261852 other upstream 2326474 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other upstream 2326474 25874910 ~ 25878653 (-) True LOC111195415
TU262021 other upstream 3483227 27031663 ~ 27033089 (-) True G193097
TU262199 other upstream 3876606 27425042 ~ 27476869 (-) False LOC103046149

Expression Profile


TU261089 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 20.
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TU261089 Expression in each Bioproject

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TU261089 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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