RNA id: TU261315


Basic Information

Item Value
RNA id TU261315
length 522
lncRNA type sense_over
GC content 0.49
exon number 2
gene id cntn2
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 24039246 ~ 24105898 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aatttgggagaaatgttgtctgtagtttatagaataaaacagcaatgttcattttactcaaacatatacctataaatagcaaattcagagaaactgagcTGTATAGACAtgtgtaacaaacacatgaacattTTTCAATTCCATTATGCCCTGCTTTCCACCAGTGTACTgatctctgtatctgtatcctCTGTGCTCTCAGTCCTACACCGAAGCTGCGCTGGAGGAAGGTGGATGGGATCTTACCCTCGAAGGTGGGAGCGAGTGCAGATGGACCTATCCTGACCCTTCCTGACCTGAGCTTTGATGATGAGGGCGTGTATGAGTGTGAAGCCTACAGCTCAGAGGGACGGGATACACACCAGGGGCGCGTCTCTGTCCAAGctCAGCCCGAGTGGCTGCAGGTGATGAGTGATTCCGAGGTGGAGATCAGTTCCGAGCTGCACTGGAGTTGTGTAGCTGCAGGAAAACCACGACCGAGCATCCGCTGGCTACGCAACGGACTGCCTCTCAGCACACagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261318 lncRNA downstream 13442 24055294 ~ 24055585 (-) True G192578
TU261314 lncRNA downstream 19293 23992196 ~ 24049734 (-) False G192574
TU261312 lncRNA downstream 34236 23992196 ~ 24034791 (-) False G192574
TU261313 lncRNA downstream 34236 23992196 ~ 24034791 (-) True G192574
TU261196 lncRNA downstream 184489 23876635 ~ 23884538 (-) True G192484
TU261319 lncRNA upstream 12823 24082804 ~ 24083308 (-) True G192579
TU261358 lncRNA upstream 190653 24260634 ~ 24262555 (-) True G192589
TU261360 lncRNA upstream 210393 24280374 ~ 24280691 (-) True G192591
TU261366 lncRNA upstream 230225 24300206 ~ 24352058 (-) True G192597
TU261576 lncRNA upstream 774574 24844555 ~ 24860400 (-) True G192754
XM_007228563.3 mRNA downstream 41982 24015546 ~ 24027045 (-) True LOC103040944
XM_007228562.3 mRNA downstream 67079 23994623 ~ 24001948 (-) True LOC103040645
XM_022682683.1 mRNA downstream 67096 23994623 ~ 24001931 (-) False LOC103040645
XM_007228561.3 mRNA downstream 80828 23980543 ~ 23988199 (-) True LOC103040327
XM_015602141.2 mRNA downstream 98860 23957828 ~ 23970167 (-) True zc3h11a
XM_022682685.1 mRNA upstream 77846 24147827 ~ 24283699 (-) True nfasc
XM_022682690.1 mRNA upstream 704058 24774039 ~ 24800901 (-) True LOC103045744
XM_007247766.3 mRNA upstream 1165133 25235114 ~ 25354477 (-) False lrrn2
XM_022682696.1 mRNA upstream 1165133 25235114 ~ 25334907 (-) True lrrn2
XM_022682699.1 mRNA upstream 1438507 25508488 ~ 25554659 (-) False LOC103039085
TU260862 other downstream 1010222 23054633 ~ 23058805 (-) True G192251
TU260753 other downstream 1280072 22786334 ~ 22788955 (-) False LOC103041653
XR_002651631.1 other downstream 1346122 22711022 ~ 22722905 (-) False amhr2
XR_002651628.1 other downstream 1706570 22349347 ~ 22362457 (-) True alas1
TU260341 other downstream 2217385 21846969 ~ 21851642 (-) True G191862
TU261664 other upstream 1141694 25211675 ~ 25217550 (-) True G192815
TU261852 other upstream 1804929 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other upstream 1804929 25874910 ~ 25878653 (-) True LOC111195415
TU262021 other upstream 2961682 27031663 ~ 27033089 (-) True G193097
TU262199 other upstream 3355061 27425042 ~ 27476869 (-) False LOC103046149

Expression Profile