RNA id: TU261855


Basic Information

Item Value
RNA id TU261855
length 3575
RNA type TUCP
GC content 0.45
exon number 3
gene id LOC111195415
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 25874910 ~ 25878653 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaCACTCCAATCTTTTGTTAGCattgtgtttgtgctgtttCAGTTATTGGGACTTCCTCTAACTGAGCATTTTATATTGCTCACTCTGTATGTTTATTATCGCAGTTGTTGTAATCTACATCAATGGATCTGCTGTCAGACCGGAAGTtctaacacaaaataaacaaagatggCCGCTCCTTGTCATCACAGAAAATAAGGTGGATAGGACCGGATCGCTTGGCGTATTTGACCCGTTCCTATTCAAAGGCACCTAATTGGTGGAGGGCGAGGGCCTCATAGGTCCAGGTGTACTGCTGGACGCCATCGGACTTGCTGAGACGGTAGCCATATCCTTCATTCCGCAAAGTCcgcctttaaaaaacactgaaaccaaaataaaactcTTTATGTTGCCCTCAGTGCTACTGTACACGAGCTACCTAAAGCACTGCATTGGCATTAATGCTGCAAAAGCAGGCCCACCTAAGTACACTTATTTCTTTCACGTTTCAAGAACTTGCTGTGCCTGTGGACAACAGTATGTGCATCTGAGCGACTCGGACGAGCCACCGCGGACAACGTACCTCGACTACAGTACCTTCAAGCGATGAACAGATTCTTCACTTCTTATTGTTTCGGACAAACTCCCTGCTCGAGAAAAAGCTGCCTTTGGATgatcacttttattttaatgtttattaatgtctACTCATCTCACATTAATAAACCCTCTGCTGTGGGATTAATGCTAAAAAATGCCTAAACTTTTGGCACTAGAATTTACAGGTTTGGTAGGCAGTGAGTAGTAGAGGTGTGAGCAAACTGGTTATTTAAAGAGCATTCACACTGCAGTGAAGCAAAGCGAAGTGAATCGAAGTGAAGCATTTTTAACATCGCTTCTTACTGTTTGCCATGTGCACAAGCAGCAGTTTTGCGTAAAGGACTGTTAGAGTGGTAGAAGCGCAAACAAGGCAAAACAAAATCTAATTTGTGATGTAGAAGTAATGAAGAAGCGAATTTCGCTGGGCTTCATGACGACAAAAGCCTAGTTGGTTGCCgtggtgttgccaggtggttgcagAGATGTTGCTACAGTATAGCTGTTGTATAAGATTTTGCAAGGTGGCTagatgttgcaaggtggttgttaaggtgttgacCTACTACTATAGCTGTTGGTTACTAAGATATTGcaaggtggttgttaaggtgttgcctCACTACTATAGCTGTTGGTTACTAagatgttgcaaggtggttgttaaggtgttgcctCACTACTATAGCTGTTGGTTACTAagatgttgcaaggtggttgttaaggtgttgcctCACTACTATAGCTTTTGGTAACTACgatgttgcaaggtggttgttaaggtgttgcctCACTACTATAGCTTTTGGTTACTAagatgttgcaaggtggttgttaaggtgttgcctCACTACTATAGCTTTTGGTTACTAagatgttgcaaggtggttgttaaggtgttgcccTACTACTATAGCTGTTGGTTACTAAGAAATGTCTGGGTGGTTCCTAAGGTGTTGGTAGACAGTTGCTTTGCAGTTGCTAAGgacttgctaggtggttgctatggtgttgctttatatttctgtcaaAATGCTGGAGTCCACAAACATGTGGCTAAATCTTGGCCAAAACGTTTGCTCAAAACTTATAACATTCCTTCTtgctatctttctttcttttttttacaaaaactgtactatagatcattttttaaagcttaaagcATAGAAATATGATATATGTCCTATGTGTCTTCCAAATTTGGTGACTGTATCTCAAAAAACGTGACCTGTAAAGTAAAAGTTTTTGGTTTAGTGCATTCCTAAGTGTTATTTTGTGCCGATTCCCTTTGCTTTTGATTTTGCTTTGCTTCGCTTTTGCGTCGCTGTTGCTTCACTGTAGTGTGAATGTACCATGCAAGGTTGCTCACTTCTGGAATAAATCTTCAGTATAGTtccttttagatttttttcttttttttttttagattttaacaaCATTTTGGCAGTGTCATCTTACGTCTTACATATtttgggtatatatatattttttcccttcTATGGACAGGAACACTTTGAACTGGCAATAATTTCAAGACCCTTTGGCCATGTcggtaagtgtgtaagtgtgtgtgtgtacgactTTGAAGTGCATGTACGAcacaggtcaaaagtttggacacaccttctcattcaatgtattttcatgactatttaaattgtagattctcactgaaggcaccgaaactatgaatgaacacatgtggagttatgatgtacttaacaaaaaattacctggcctccacagtcaccggacctgaacccaatccagatggtttggagtgagctggaccacagagtgaagaaggcaaaggggctaacaagtgctaataaacacctctgggaactcctttcttcaagactgttggaaaaccatttcaggtgaccacctcttgaagctcattgagagaatgatgccaagagtgtacAAAGAAGTggtcagagcaaagggtggctattttgaagaaactagaatatatatatttatattgtttttagttatttaactttttttttgttaagtacaaaactccacatgtgttcattcacagTTTTGAAgcctttagtgagaatctacaatgtaaatagtcataaaaataaaggaaacacattgaaaaagagaaggtgtgcccaaactttagGCCTGTACTGTGTGTGACTCGGACCAAGGAGTGTACATGTGTAGTCTGATCGATCGGTGTATGTTTTTATTGAGATTGAGACTGATTAGAGCCAAGGCCGTAACTGTCCTGCTGTCGGTGTGTCCAATCCGTAAAGGCCGAGGATCAGGACCTCAGCTTTACTCAaacgtgtgtgtgcatgtgtgtgtatcgGGGTGCATCTCGATTGGCGTCTGGACTTCGGAAGCCTGGCGGGCGGGTCACAGTATCTCCGCGTCGTCTATGCTGAAGCTGCTTCGGCGGCTGCTGTCCACGGACGCCTCGGGCGACATGGCCGAGAGCAGGGGGTCGCCGCCGAGGGGCGACAGGGCTTCCATCAGCATGTAGCTCATGTCGTTCTTCTTCCCCATTTGGGAGCCACAGCCTCCCCCGCCGCCCAGAGAGCTCAGGTCCCCTAGGCAGCCCAGGCCATCCGAGTAGCCCCCTGGCATCCCGCCGTCGCACAAGTCCAGCGAATGCGCAAAGTCAAAAGGCTGGGTGCTGCCCACAGCCGAGTACTGCAGAGGCGGGGGCTGGGGGTGCAGGTGCTGGGGCAGAGGGGGCAGGCCTCGGGGCTGCTGAGGCTGGCCCgggtgctgctgctggtgctgctggtgctgctgctgttgctgctgttgttgttgctgctgttgttgttgctgctgttgttgttgggAGTGGTGCATGGGCATATGGGGTTGGTGAGGATTGTGATGGTTCTCCTCTGGGCTGCTCTCCTGCTTCACGAACGGGTTCATCATCTCCATGTTGTTCCCGAGGCCAGAGGGGGAGGTACTGGGGAGGCCGTGCAACCGGGCCTGCATCTCCAATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261833 lncRNA downstream 16494 25854665 ~ 25858416 (-) True G192955
TU261835 lncRNA downstream 17755 25856383 ~ 25857155 (-) True G192956
TU261830 lncRNA downstream 48954 25819208 ~ 25825956 (-) True G192952
TU261827 lncRNA downstream 55959 25809068 ~ 25818951 (-) True G192951
TU261823 lncRNA downstream 89455 25782382 ~ 25785455 (-) True G192947
TU261905 lncRNA upstream 348955 26227608 ~ 26297229 (-) True G193005
TU261914 lncRNA upstream 555855 26434508 ~ 26434782 (-) True G193014
TU261917 lncRNA upstream 614550 26493203 ~ 26493562 (-) True G193017
TU261918 lncRNA upstream 699079 26577732 ~ 26577984 (-) True G193018
TU261920 lncRNA upstream 740093 26618746 ~ 26618978 (-) True G193020
XM_022682704.1 mRNA downstream 104191 25587726 ~ 25770719 (-) False ppfia4
XM_007247753.3 mRNA upstream 130143 26008796 ~ 26085478 (-) True LOC103036054
XM_022682717.1 mRNA upstream 235784 26114437 ~ 26349705 (-) True LOC103035733
XM_007247751.3 mRNA upstream 839424 26718077 ~ 26724106 (-) True fam72a
XM_007247743.3 mRNA upstream 1250499 27129152 ~ 27133856 (-) True il10
XM_007247790.3 mRNA upstream 1269061 27147714 ~ 27153326 (-) True LOC103047370
TU261664 other downstream 657360 25211675 ~ 25217550 (-) True G192815
TU260862 other downstream 2816105 23054633 ~ 23058805 (-) True G192251
TU260753 other downstream 3085955 22786334 ~ 22788955 (-) False LOC103041653
XR_002651631.1 other downstream 3152005 22711022 ~ 22722905 (-) False amhr2
XR_002651628.1 other downstream 3512453 22349347 ~ 22362457 (-) True alas1
TU262021 other upstream 1153010 27031663 ~ 27033089 (-) True G193097
TU262199 other upstream 1546389 27425042 ~ 27476869 (-) False LOC103046149
TU262456 other upstream 2315726 28194379 ~ 28212718 (-) False LOC111195422
TU262454 other upstream 2331371 28210024 ~ 28212718 (-) False LOC111195422
TU262455 other upstream 2331538 28210191 ~ 28213070 (-) True LOC111195422

Expression Profile