RNA id: TU261939


Basic Information

Item Value
RNA id TU261939
length 441
lncRNA type sense_over
GC content 0.32
exon number 2
gene id fam72a
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 26711253 ~ 26724106 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttacagtttggATTTGAAGGTATGTTTTAAGGTCACACTGCAGTACTGCAGTCACatcatttcacatttttaatttatatttttttttaaatctgcagTGAATGAATTGGCTTGCATTTTAAAGATTGCTGATATTGGTTGATGTCACTTAAATACaggtttttactgtattttactgttaCTGCAGtctgtacatactgtatactgtttatacaacttttttttgtttctcttccgAACAGCCAATCAaggtctaaaataataataatgtttaaagaGCGTGCACAAGCTGAGCAGTTCTTTCCAAAGAttagtttattttcttgtaGTTTTCTGAGAACACTGTGGCTCTCCTGAGAATGACAAAATGGAACATGCAGCACAGCAAACGTGAACCATTTGagctttttcctgtttttttattttttttattattatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261920 lncRNA downstream 92275 26618746 ~ 26618978 (-) True G193020
TU261918 lncRNA downstream 133269 26577732 ~ 26577984 (-) True G193018
TU261917 lncRNA downstream 217691 26493203 ~ 26493562 (-) True G193017
TU261914 lncRNA downstream 276471 26434508 ~ 26434782 (-) True G193014
TU261905 lncRNA downstream 414024 26227608 ~ 26297229 (-) True G193005
TU261955 lncRNA upstream 156952 26876370 ~ 26876620 (-) True G193049
TU261968 lncRNA upstream 166418 26885836 ~ 26899814 (-) True G193056
TU261975 lncRNA upstream 178853 26898271 ~ 26899404 (-) True G193062
TU262008 lncRNA upstream 207690 26927108 ~ 26999073 (-) True G193085
TU262036 lncRNA upstream 418665 27138083 ~ 27139236 (-) True G193110
XM_022682717.1 mRNA downstream 361548 26114437 ~ 26349705 (-) True LOC103035733
XM_007247753.3 mRNA downstream 625775 26008796 ~ 26085478 (-) True LOC103036054
XM_022682708.1 mRNA downstream 940534 25587727 ~ 25770719 (-) False ppfia4
XM_007247743.3 mRNA upstream 409734 27129152 ~ 27133856 (-) True il10
XM_007247790.3 mRNA upstream 428296 27147714 ~ 27153326 (-) True LOC103047370
XM_007247741.3 mRNA upstream 443329 27162747 ~ 27170995 (-) True prelp
XM_022682725.1 mRNA upstream 477633 27197051 ~ 27210316 (-) False LOC103032351
XM_007247742.3 mRNA upstream 477633 27197051 ~ 27210315 (-) True LOC103032351
TU261852 other downstream 832600 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other downstream 832600 25874910 ~ 25878653 (-) True LOC111195415
TU261664 other downstream 1493703 25211675 ~ 25217550 (-) True G192815
TU260862 other downstream 3652448 23054633 ~ 23058805 (-) True G192251
TU260753 other downstream 3922298 22786334 ~ 22788955 (-) False LOC103041653
TU262021 other upstream 312245 27031663 ~ 27033089 (-) True G193097
TU262199 other upstream 705624 27425042 ~ 27476869 (-) False LOC103046149
TU262456 other upstream 1474961 28194379 ~ 28212718 (-) False LOC111195422
TU262454 other upstream 1490606 28210024 ~ 28212718 (-) False LOC111195422
TU262455 other upstream 1490773 28210191 ~ 28213070 (-) True LOC111195422

Expression Profile