RNA id: XM_022682731.1


Basic Information

Item Value
RNA id XM_022682731.1
length 5338
RNA type mRNA
GC content 0.45
exon number 21
gene id LOC103046149
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 27425042 ~ 27701331 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCCCAACTCTCTTCACGCTCTTCTTCAGCAGCGCTCGCGACCACCACTTCCACTCCGCCGGTGTGAGGAGAAGACCCCCGGAGACTCCCAACAGCAGCAGACCCCCCCAGCACCCTAATCAAGACCCCCTGTAGtgtattttatctttatctttagcCGTGATCTGGCAACCCACCCCTCCTGTCCGAGCCCCCAAGCCCCTCTGGACACCCATGGAGGGAGACGTTATGGACAAACTGGACGACATGGCTTCTGTGTACGAGTTCGACCCGTTCACGGGCAACATCCCCGCCACCAAGGTGGAGATCACCGTATCCTGCAGGAATCTTCTAGATAAAGATACATTCTCCAAATCAGACCCGATGTGTGTCCTCTACACCCAAGGAGTTGAGACCAAGCAGTGGAGAGAGTTCGGAAGAACGGAGGTGATTGACAACACGCTAAATCCGGATTTCGTGCGGAAGTTCATCCTGGACTACTTCTTTGAGGAGAAGCAGAATCTGCGCTTTGACTTATACGACGTTGACTCTAAAAGCCCAGATCTCTCAAAACATCCCTCAGAATGCAACGATTTCCTTGGGCAAATGTTCTGCACCCTGGGAGAGATTGTGGGGTCACCAGCAAGCCGACTGGACAAGCCTCTTGGGGGCATCCCCGGGAAGAAGTGCGGGACCATCATCCTGTCAGCGGAGGAGCTCGGGAACTGCAGGgacAGTGCCACCATGCAGTTTTGTGCCAACAAACTGGACAAAAAGGATTTCTTTGGCAAGTCAGACCCCTTCATGGTGTTCTACAGAAGCAATGAAGACGGAACGTTCACCATCTGCCACAAGACAGAGGTGGTGAAGAACACACTCAATCCCGTCTGGCAGTCTTTCACTATCCCGGTGAGAGCACTCTGCAATGGAGACTTCGACCGGACTATCAAGGTGGAGGTGTATGACTGGGACCGAGATGGAAGCCACGATTTCATCGGTGAATTCACCACCAGTTACCGCGAGCTCGCCCGGGGACAGAGCCAGTTCAACGTGTACGAGGTGGTGAATccgaagaagaagatgaagaagaagaaatacgTCAATTCGGGCACGgtGACGCTGCTGTCTTTCTCGGTGGAATCCGAATTCACTTTCCTCGATTACATCAAAGGAGGGACCCAAATAAATTTCACCGTGGCCATTGACTTCACAGCTTCGAATGGTAACCCATCCCAGTCCACGTCTCTCCACTACATGAACCCATACCAGATGAACGCCTACGCCATGGCACTGAAAGCCGTCGGGGAGATCATCCAGGATTACGACAGCGACAAGATGTTTCCGGCACTGGGCTTCGGAGCCAAACTGCCCCCTGATGGACGGGTGTCTCACGAGTTTCCGCTGAATGGTAATATTGAAAACCCCTACTGCAATGGAATCGAAGGGATTCTGGAGGCGTACCATCAGAGCTTAAAGACAGTCCAGCTTTATGGGCCCACAAACTTCGCTCCAGTCGTCAACCATGTGGCCAGGTACGCAGCAGCTGTGCAGGACGGCTCGCAGTACTTTGTCCTCCTCATCATCACAGACGGCGTCATATCAGACATGTCCCAGACCAAAGAGGCCATTGTGAACGGTGCCAAGCTGCCCATGTCAATCATCATTGTCGGAGTGGGCCAGGCAGAGTTCGATGCCATGGTGGAGCTGGATGGTGACGACATAAGAATCTCCTCACGAGGGAAACTAGCAGAACGGGATATTGTCCAGTTCGTGCCATTCCGGGACTACATGGACCGCACAGGAAACCACGTCTTAAGCATGGCCCGACTGGCCAAAGACGTCCTTGCCGAGATCCCTGACCAGTTCATCTCCTATATGAAGAGTCGGGGCATCAAGCCCAACCCGGCACCCCCTCCATACACGCCCCCGGGACATACACACCACACCCAGATCTGAGGATCCTGGCCAATCGGTGGCCAGCTGGAGATGACATCAGCCTCCCTTAGGATATCAGATGGGACAGGTCTGATGAAGCAGGGGACAGTTTAGGCTCCCTGGTTGCGTTGATGTGTGTACGGACTCGCCGGGACACTTCCGAAGTGCAGAGACATTTTTGTTCGTGCGTCTTTTTCGTACGTCGTTCGTACATTTCCTGCCTGTTTTTCATGCCGGGGAGACGGCACAATCCGAGAAATGGACTCCAGTCgagttttgtctgttttttgtcaaaaaatgaaaagctaacaaaaacaacaacaacaacaacaaaaaatatcttGGCCTGTGACTGTTCTCAGTTCTTTATTTGGGGAGATGGGAAGTTGAGAAGCGAGGACGTGGTAAAGGACAAGGAGGAGGACGATGTTTGTGGTTTCAGCTCGTGCCTGTCTGTGGTCATCTCAGTGTACCAGGACAAGGGTGCCGTGCTCCGACCTTTTGACCTTGCTCTGCATCGATGTATTAGCGTATGTACATTATTCAGGTGATGTTTTTAGATTCCTATCTCAGTGGCGTTCAGTTTGGATTGAGACTTTTGTGTGCATTCGGTTTCTCACTTTTGCACACCACTTGCATTACCTTTGTAAATCTTGATTCTGTCGAAAGCCATTTATGTTCCTGAAAGCATGCTGGAAGGAGCCAAGACCCCATAGCCAAGACCCTAGAATCAAGACCTCAGAATCAATACCCCATAGCCAATACCCTAGAGCCAAGACCGCAGAACCAAGGCCCTATAGCCAAGACCTCAGAACCAAGACCCCATATCCAAGACCCAAAATCAAGACCCCAAGACCAAGACCTCAAAACCAAAACTCTCATAGCCAAGACGCCAGAACCAAGACCCTATAGCCAAGACCCTAAAGTCAAGACCTCAGAACCAAGACCCAATATCCAATAACCTAGAGCCAAGATCTCAGTACCAATACCCTATATCCAAGACTCCAGAGCCATGACCTCAGAACAAAGATACCATATCCAAGACCCAAAGCCAAGACCTCACAACCAATAACCCATAGCCAAGATCCTAGAGCCAAGACCTCATGACCAAGACTCTAGAGCCAATAACTGAGAACCAAGATCCCATATCCAAGACCCAAAGCCTAGACCCCTGAGCCAGGACCTCAGAACCAAGACCCCTGACCCAAGACCCTAGAACCAAGATCTCAGTACCAATACCCTATATCCAAGACCCAGAGCCAAGACCTCAGAACCAAGACCCAAAGCCAAGACCTCAGAACCAAGACCCCATAGCCAAGATACTAGAGCCAATACCCCAGAGCCAAGGCCCCCAAGACCCCAGAGCTAAGCAGCAAAGACAATACCTCAGAACCAAGACCCCCATAGCCAAGCCCCCAGAGCCAAGCGATCTAGGTTTCTTTATATATACAAATCTGCGCCCAAATATTTATCcagtttttccttttctctagTAATGCATATTTGTCACAATGAATCATTTTAGATCTTTAACCTTTAAACATTAGGTTCACAGATGTGATATTAAACATAATGAAGAAACTACAACAAACTGAATCGTTTTGCATATCTTGTGGAGTCCCAGAGGGTTCTGTGTTAGGGTCTATGGAATCgtttaacatttaacaccttgccagagttcCTGTTTAACAGCCTAAATTGTTAAACTAACACTAAAAAGAGGTAAACAAAATTATTTgaacattatttaataaatgtaaccAACATTTGTCCTTTTAGAAGAGATTAGCTTGTGTGTTTTGGTTCTTAATACTGGAGAAAACATCCCTCTTCGTCATCCAGtctttttttctactgtttAAGCTAAAATTTCAACTCTTCAGTTTTTGCTGTGTGGGGTAATGCACAGGGTTTGGGAACATAAACCCATATTGAAGGTCATattagatagatgatagatagatactttattgatccccgaggggaaatacACATTAACAAAAGCAAACTAAACcattaattatgtaatttaagattttatttaattgatttaatttaacataCTGAGAACGTAGAACTCTCTCTTGCTTTTGAATGAAATTGTTAGACCACCATACCAGCTTACAAcattcaaacatggtggtggttgtaTCAGAGAATGTGATGAATGTTAAGGGTTGTTATCAGATACCTCTTTTTTCATTTGTCCATCTGTCCAACAGCTAAAGCTGATAAACAGGTATTCAAAAtgcaaacatgcaaaaagttaaaatctttttttcagaATGGCTGCAAGGAAACAAAATGAATGAAGCCAAGCTGGATTTTAGTCTgaaagtaataaattaaatcagtgCTGTGATATAAATGGGATTAAATTTCTCCACAAAATGTAAGAGCCAGTTCTTGTATTCTACATGCTTGATTTACATTTTAGATAACTTTGCTCcataaataaatggaataatgataatatttcaCTGTGACAAATAGGCACTAATAGAAAAAATCTGAAAGGGTGCAAATGTGTTTTCATGGCCCTAAACAGTGGCCATCAGGAGAAAAAGCATATAATGTGAAAAGTGGAGGGAATTATTTGCTGGATCATCATAAATACTGatataggtaaaaaaaacaaaacaagaatgaTAGATTTTAGatcatatattttcatataccCCCAACCATCAACATGCCACCTGGACCAAGATAAGTAGTAACTAGTCTTATTTACTCCTGAATAAGACTTAATTGTCACTGCCAGTATCagtatttctcactctctctcttgttctttctctttctttctcttttgccTCTATTCTTCTCTTTCAAACAAATGAACACAATGACCTACAGGTTCCAGTTAAGTTAAGTACATTATGGCTTTGAGTCACACTAGAGCTGTTAGGCTATATGAAATCCatggttatttttattattattattatttaaccttatttttGTAAgtatttgtggacacctcttctcatttaagTTGCACCTTTGTATGTTACATTAGttaatagaataggactctctggagcagatgaaCTTAAACGTAAAACAACCACACCAAGACCAAGAAGAAGAGGTGGTCCCGGTTCCGTTCCAACAAACTCTGGAACgatttgttttttgtgagatcaaaactgctgttcaggtgcagtgtaacctgatatattagccagataattactatagctatgaacaaacgctgcctctgctgctgctccatgctaagctGTTTACACACCAAATGCTGTATGTGCAGCACTCACTCACTCGGTAACGTCCAAGAAACTTCGCAACTTCACTTACTGTATAAGGCGgacatcccattgaaaacactgctTGTAAGTGCAGCAGCTTGTAAGTTTCAACATAAAGTATttaataggggtgtcacgattctctaaatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262192 lncRNA downstream 2838 27451745 ~ 27463954 (-) False LOC103046149
TU262160 lncRNA downstream 65150 27400837 ~ 27401642 (-) True G193200
TU262159 lncRNA downstream 75264 27390794 ~ 27391528 (-) False LOC111195340
TU262158 lncRNA downstream 76644 27389723 ~ 27390148 (-) True G193198
XR_002651639.1 lncRNA downstream 79888 27384262 ~ 27386904 (-) True LOC111195418
TU262406 lncRNA upstream 22529 27723860 ~ 27724105 (-) True G193367
TU262408 lncRNA upstream 29672 27731003 ~ 27731662 (-) True G193369
TU262409 lncRNA upstream 34571 27735902 ~ 27736111 (-) True G193370
TU262416 lncRNA upstream 309660 28010991 ~ 28015537 (-) False tmem167b
TU262415 lncRNA upstream 309732 28011063 ~ 28015537 (-) False tmem167b
XM_007247730.2 mRNA downstream 13416 27445479 ~ 27453376 (-) True bcl2l15
XM_022682148.1 mRNA downstream 75221 27390805 ~ 27391571 (-) True LOC111195340
XM_015605469.2 mRNA downstream 162852 27301296 ~ 27303940 (-) True LOC103029919
XM_015605466.2 mRNA downstream 167221 27296666 ~ 27299571 (-) True LOC103046766
XM_015605467.2 mRNA downstream 173983 27287220 ~ 27292809 (-) True LOC107197599
XM_022682736.1 mRNA upstream 55896 27757227 ~ 27874978 (-) False kif21b
XM_022682734.1 mRNA upstream 55896 27757227 ~ 27874978 (-) False kif21b
XM_022682735.1 mRNA upstream 55896 27757227 ~ 27874978 (-) False kif21b
XM_022682733.1 mRNA upstream 55896 27757227 ~ 27874978 (-) True kif21b
XM_022682740.1 mRNA upstream 210344 27911675 ~ 27955052 (-) False LOC103045240
TU262021 other downstream 433703 27031663 ~ 27033089 (-) True G193097
TU261852 other downstream 1588139 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other downstream 1588139 25874910 ~ 25878653 (-) True LOC111195415
TU261664 other downstream 2249242 25211675 ~ 25217550 (-) True G192815
TU260862 other downstream 4407987 23054633 ~ 23058805 (-) True G192251
TU262456 other upstream 493048 28194379 ~ 28212718 (-) False LOC111195422
TU262454 other upstream 508693 28210024 ~ 28212718 (-) False LOC111195422
TU262455 other upstream 508860 28210191 ~ 28213070 (-) True LOC111195422
TU262651 other upstream 874776 28576107 ~ 28583747 (-) False LOC111195343
TU262654 other upstream 874776 28576107 ~ 28583747 (-) False LOC111195343

Expression Profile