RNA id: TU262415


Basic Information

Item Value
RNA id TU262415
length 2498
lncRNA type sense_over
GC content 0.39
exon number 3
gene id tmem167b
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 28010991 ~ 28015612 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCAGGGCTGGAGTGGAGGCTGGTTATGGGAGGCGAGTGTAGAGCGGCTAGAGCAGCCGGAGCTCCAGATTCACTTTAATTAGAGCGGAACAGAGCGCTGCCAACATGACCAACGTGTACTCTTTTGACGGAATCCTTGTGTTTGGGATTCTGTTCATTTGCACGTGTGCGTACCTGAAGAAGGTCCCTCGTCTGAATAGCTGGCTTCTGTCGGAGAAGAAGGGGGTGTGGGGAGTCTTTTACAAAGCTGCGATCATTGGGACGCGACTGCACTTTGCCGTGGCGCTGTCCTGTTTGGGGATGGCGTTCTACCTGGTCTTCCTGAAATGACACGCACAGAGCAGCTGCATGGACACTGTTTGGACAATGTGCCCTGGAATGCAATTGAAAATGGGGTACTGGCAAGTGCTGCCATCTGCTGGTGAGGCGGCACACAGGCTCTGCTCCACCGTTCTGGCTCCTGTGTGGCCTCCACATACACAGATACACATCCACAGTTCAAATTCCGACTGAAGTGAAGTTTCCCTTGATGATTTGCTTTAGGCTTGACTTGGAGAAAGATGACCCCAGGACATGATATACAGAAATGTGTCTATCCTGATTGAGTGtcaaaacagataaaaactaTGTATTGGGACAAACAACTCCCCTCAATAagcctgtgtgtttaaatattaatcCTGTAACTTAACTGGGTAGAAAGTATGTTTTGGGCCAAAATGAAGAAAcactattatctttttttttctggattatTTACAATGGATCCTTTTAAGGAGGGAAAAAGTTTgtgggtcttttttttttgtcttggctGTACATAATATTCAGTCGTTTGATTGATCTTAGCTTTCTTAAAACATGCTATCatttggcactgctgtgctaacattataataaatgttCTATCACCCATTTTTAAACTAGCAAACTTGGGGCCCATCCACACGTATCtggatattttaaaaactaaaagtttttGACTGAGTTTTATCACATTCATAGAAAAATGTTTTCACACCAGAAAGTCTGGAACAGAGCCCGGAACCAAATgcgtttgttacattgtatactgtacatttagtcatttttgtttattgagCACTCTAAATAACCTTGATGCATTTTGTCATCATCACTAATGTGGTCAATCCCTCTATACcctacactgattggtttgttgaaGGGTGTGTGTAGGATGGTGGTATGTTGTCAATTTCGTGAGTTGCCTTTTCCTCCCACTGCCTAGAATATGACCCCCTTCAAATGGGCAGGCGAAAGTTCCGCAAAGGAACGACTGTAACAGGTTCCactcagattccttttatttctggcTTATAAagaagggttaatctacagttacagtatatacagaaaTTATAAACTTAATCTACCACCTTGTCACACTGCAGACAAGGTGGTAGATTCAGACTGAAACCACCTCTTCTGGTCAGCTCAGATTTTGATAATTTGTCCCAGAATGTGGTTTGTGGCACTTTTCATGTGTGCTATTTTGGTTTAAACCAAACTGCACTGAAAACACTCTTCAGTGTAGTTGTCATGTGAACAgggaaaacaagaaaacacaatGAACAAGGTCACATTGCAAGCATTTGTCTGGCTGACTCTCATAACCTCCTTACTGTCTATGTAGTGAATTATACAAGTCATAAAACGTTGGCATCTGTGTGCAGGTACCACTAGATTTCAGATTTccacatattaataataatgtttaaattaataattagtagtaAGAAgtaatttgagtattttttttctactttgtgGTGTGTTGATACTTTTGCCCCTTTCTAGTCAGAAGTAGTGtcaaatacagagaaagagatatcttatttttttattaaaaatccagATACATGTGGACAGGGCCTTTAGCTCTATGGGATGAATTGGAGGCCTTTAAATCTTTGTTCCTGATCAAGATATTAACTAAAAGATATCAAAATATTCACCAGTTTCCATCTTCTGCAGTTGGATTTGCACGTGACATTACTGTACCTTTCACACTCTATCATATGTCTCACATGGTGGTCATTCTGTAAATACACATCCTTATTCTCTACCTGTGCAGAAGGATCAGTACAATATGATGGGAGTGGAATGTTTGATATACATTGTAAATATATGTGAGAAATATAGATATACATTATTGGGAACCTTCAGAAACATTGTAATGGTCTGGGTGGggttcttttgttttattttctaaagcAATACTTTGCTAACTAATTTGTGGTGTCTCGGTTTTTAGTGAGATTTAGCAGAATGTCACTTTTAATAAAGTTGGAAATTGGCTCACATACTTCACTTATTTAATCCGTAAACACTTAGTAAATGCCAAAGTGGTCATAGCCTTGATGTCAACATTGATGCTGTGCTGTTCTTATGAAGCATCTTTGCTAGCTAATGTAAAACTGAAGGTTTTGGaatccttgttttttttgtatttcaaatAAAGATTATACATCCTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262409 lncRNA downstream 274952 27735902 ~ 27736111 (-) True G193370
TU262408 lncRNA downstream 279401 27731003 ~ 27731662 (-) True G193369
TU262406 lncRNA downstream 286958 27723860 ~ 27724105 (-) True G193367
TU262202 lncRNA downstream 504534 27488865 ~ 27506529 (-) True G193223
TU262439 lncRNA upstream 51937 28067474 ~ 28067681 (-) True G193386
TU262468 lncRNA upstream 150304 28165841 ~ 28166081 (-) True G193411
TU262484 lncRNA upstream 219628 28235165 ~ 28236469 (-) True G193424
TU262486 lncRNA upstream 228271 28243808 ~ 28244702 (-) True G193426
TU262496 lncRNA upstream 301807 28317344 ~ 28318704 (-) True G193435
XM_007247729.3 mRNA downstream 2454 27962367 ~ 28008609 (-) True LOC103028137
XM_007247728.3 mRNA downstream 2456 27962367 ~ 28008607 (-) False LOC103028137
XM_022682741.1 mRNA downstream 56620 27911675 ~ 27954443 (-) False LOC103045240
XM_007247727.2 mRNA upstream 8800 28024337 ~ 28028670 (-) True b3galt6
XM_007247722.3 mRNA upstream 15149 28030686 ~ 28048695 (-) True LOC103026702
XM_022682745.1 mRNA upstream 50345 28065882 ~ 28162362 (-) False LOC103044609
XM_022682744.1 mRNA upstream 50345 28065882 ~ 28162362 (-) False LOC103044609
XM_022682746.1 mRNA upstream 52839 28068376 ~ 28162362 (-) True LOC103044609
TU262199 other downstream 534194 27425042 ~ 27476869 (-) False LOC103046149
TU262021 other downstream 977974 27031663 ~ 27033089 (-) True G193097
TU261852 other downstream 2132410 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other downstream 2132410 25874910 ~ 25878653 (-) True LOC111195415
TU261664 other downstream 2793513 25211675 ~ 25217550 (-) True G192815
TU262456 other upstream 178842 28194379 ~ 28212718 (-) False LOC111195422
TU262454 other upstream 194487 28210024 ~ 28212718 (-) False LOC111195422
TU262455 other upstream 194654 28210191 ~ 28213070 (-) True LOC111195422
TU262651 other upstream 560570 28576107 ~ 28583747 (-) False LOC111195343
TU262654 other upstream 560570 28576107 ~ 28583747 (-) False LOC111195343

Expression Profile